Sample 3300001253

Basic Information
IMG/M Taxon OID	3300001253 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0055119 \| Ga0000684
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 20AUG2008 deep hole epilimnion
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300001253 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063444 | Gp0055119 | Ga0000684

Sample Name

Freshwater microbial communities from Lake Mendota, WI - 20AUG2008 deep hole epilimnion

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	5707621
Sequencing Scaffolds	18
Novel Protein Genes	22
Associated Families	22

Dataset Contents

Total Genome Size

5707621

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	3
Not Available	14
All Organisms → cellular organisms → Eukaryota	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium

Not Available

All Organisms → cellular organisms → Eukaryota

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → epilimnion → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000951	Metagenome / Metatranscriptome	822	N
F003599	Metagenome / Metatranscriptome	477	N
F003728	Metagenome / Metatranscriptome	471	Y
F004758	Metagenome / Metatranscriptome	424	N
F006499	Metagenome / Metatranscriptome	371	N
F011472	Metagenome / Metatranscriptome	290	Y
F012550	Metagenome	279	Y
F012967	Metagenome / Metatranscriptome	275	Y
F019090	Metagenome / Metatranscriptome	231	N
F021715	Metagenome / Metatranscriptome	217	N
F023783	Metagenome	208	Y
F026487	Metagenome / Metatranscriptome	197	N
F031357	Metagenome / Metatranscriptome	182	N
F046199	Metagenome / Metatranscriptome	151	N
F048115	Metagenome / Metatranscriptome	148	N
F053089	Metagenome / Metatranscriptome	141	N
F053090	Metagenome / Metatranscriptome	141	N
F057093	Metagenome / Metatranscriptome	136	N
F093240	Metagenome / Metatranscriptome	106	Y
F098293	Metagenome / Metatranscriptome	104	N
F102145	Metagenome / Metatranscriptome	102	N
F102592	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
B570J13883_100033	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	5411	Open in IMG/M
B570J13883_100131	Not Available	3626	Open in IMG/M
B570J13883_100184	Not Available	3257	Open in IMG/M
B570J13883_100429	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	2313	Open in IMG/M
B570J13883_100913	Not Available	1534	Open in IMG/M
B570J13883_101585	Not Available	1005	Open in IMG/M
B570J13883_101779	Not Available	914	Open in IMG/M
B570J13883_102029	Not Available	813	Open in IMG/M
B570J13883_102039	Not Available	809	Open in IMG/M
B570J13883_102231	All Organisms → cellular organisms → Eukaryota	735	Open in IMG/M
B570J13883_102482	Not Available	657	Open in IMG/M
B570J13883_102534	Not Available	645	Open in IMG/M
B570J13883_102590	Not Available	630	Open in IMG/M
B570J13883_102622	Not Available	621	Open in IMG/M
B570J13883_102760	Not Available	594	Open in IMG/M
B570J13883_102822	Not Available	581	Open in IMG/M
B570J13883_103061	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	534	Open in IMG/M
B570J13883_103103	Not Available	527	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13883_100033	B570J13883_1000337	F102592	MNVVDDDDDDITVPDPVYMKWPKNFTCQDSPTPVLKIQYEGLSNTTSPHRNPAFITLTNKKAFTIPSCNYAIIHFPVLVRTSLPAVSILYNNDFLYKQGLTCVINQIPTNDTLLHIKVFNYKLIPLTFEKESLQFICHTVLAKYP*
B570J13883_100131	B570J13883_1001314	F102145	MVSYKIHVLKILAEKMATEKQEATETLLYNFEYPMITECGAVKITDHHVFLQFPEKPTVHVEHAVKLRRNITLYVENGQCFSLDWLPIQTVTDFFRVKEMIEKCLQSYSYLLDNKTHFSPHTFSVNPINYYESLTTGFTTNSFSLSCFEHTFDTCIQLSVINKECDKKEIPLHFQLCIGKHVVFCTERDLKCVDKAKDVHFIVQFILQKMLNISLL*
B570J13883_100184	B570J13883_1001844	F046199	TKEKFCQKYEISKEFDFNYITPYNFLDYPPIWGPHSASKKTIYLSIFCPVSEKEIQLRIKNITEQVTIKYGWTMFCVCLKYCLDLSQWSVCTTQKPNEITQVSCNKPNFNMYILNNNRVPMSLFNLSLSSLYQNKLNSALNLTNYVVPKIVSQQAPPCYLFHLCPATLRKERHNRCHCCGFHFSSHIXDW*
B570J13883_100429	B570J13883_1004292	F053089	VPDIIENHLLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIIDNHNDMMPDFKTGIFNI*
B570J13883_100913	B570J13883_1009132	F026487	MGAGQNETGARASFGFGGKVSETGTRKERPLEGGSRSRGVKEMVDVFRCLLAPHCGDRHRAMACEKFKGLSLPHRQSIIAEQELCANCLRHSENDIRRRKECLRRAAEPHWVSSSVRRPGRTPSPVEEMPTLGASAAGKVIFACRMEVMVKTKADLRQGEYGADLSVLFCPTRQMTAVVESVAIEKGIPWRAVPEVTVMLGDGRRETSTKLFLIEVKATRSHRASKEPEPVLIAAYGVQNLAPFAAAAPELPLLRHRFPSARTASMGTLAQKAGPIDLVIARDYRKQWPSVTSPSCFEADNLYLMRSNFYPGQLLYGQADPDAVGIKM
B570J13883_101585	B570J13883_1015852	F053090	LNYQFDEEPIDTYISSKHKNSEDNELPAKKLKLNDKKIAILEYSSVQLPLAPFIDYIEKYSKTFVDQCLTYNNSNETTD*
B570J13883_101590	B570J13883_1015902	F098293	LAKYQFKRGSPLQEYLQTKMREKYRIPTITFTLQNLISDLGGIINKEQLFDPLNPDIILCDSDLEVALNLKALRVTDLKHYILSQLVCIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKEAESYKLKPLLKRALKRMPSFPHHQRTFKFNEICMYLEKYFESYEDDLFDPRNVNLCMVHNDPLGKAFNVNAFHICQTTHLLQHNIIAV*
B570J13883_101779	B570J13883_1017791	F000951	RLDLQYDDLRTDKPRTASLARLCKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVFGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLAEPFMGPQACPYCPTILQVAEPKDYLL
B570J13883_102029	B570J13883_1020291	F012967	VFPPNERVNIIMTNVYRHSVLAPKERVQFDPRNRKHMVDFARFVKYNTWKDGCSYFLEDPFTDIPTMIRCKIADYTLSKLVEKV*
B570J13883_102039	B570J13883_1020391	F003599	QYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLVEPFMGPQACPYCPTILQITEPKDYLLHLFDHHAILTEAYFTCPGCIAICIFNKETYPAHYTEVHSQASALIIMFTETATHIRTQQALQLSLFIEVTLRLESFYPAEKQNKEPHYVSYLGGYSSNKKALFREVQNEQIKRNPLDLMHQMEETLSADFTTTEEIFNIQRPSSPIFLKLLKQIKNNESYSEKTKQRTTFEEKETEKDTRTDRQPR
B570J13883_102231	B570J13883_1022311	F012550	MCYACVRLELHLRYACITLALRLRYAXVTLALRLXYACVTLALRLGYTWVTL
B570J13883_102231	B570J13883_1022312	F023783	MCYACVRLELHLRYACITLALRLRYAYVTLALRLCYACVTLALRLGYTWVTLGLRLGYACVTLALRLLYACEFNINIKLSRQLPVCHQSDVSLMSVCHDSVVCLQ*
B570J13883_102482	B570J13883_1024821	F093240	MRXDESADGHFSYGPSLGLFREPFINERYLFGDSQYHNCKPYLDMEKKFFSDNAAIVREVYFDTDILLGVDSDEDLGVEEAVNAEDLVPVLSAEEIQWQHAAANDILNMEIVRVTPVNSDSEDEETM
B570J13883_102534	B570J13883_1025341	F031357	RDAERRPELLAEEKALVEELLKSAELRPLVSLVEARGLGLLRSAREGDELRTGANMSALLSAVASGKEEIQRIGRDRGWSAGITEEVLDRLQAMVREPIQMGSDVIMSSIPPKWREQATRRASEASRVIQKMTCDITTEDWSLERCQDYLVELEMATCGAMMALRLTDNDICSERVSQQVEHLSSKAREAKNMALELRQKHLDAKLQVKDRPARV
B570J13883_102590	B570J13883_1025901	F003728	RYSRPGSLGRNVKTMVVKESGSADQKKVRFPPPKNWNPDAKWTQNCVMFKECGEKHAPWACDAFKKLSPQQRLKKIEERXLCHLCYRHLQGRDCWSKDKVPNCGEDGCKAAHHHLLHGALVQGRVMIVQDISTKKAGVFLCREDVRVEGAGGTSSLHALYDWGATVTLVTHAAAAKAGLEKRVQVAAAVAGLGGCCTAVDSYYMVPVVD
B570J13883_102622	B570J13883_1026221	F057093	VPGQTGRQESSLRCRQMVAAENEGQCFRLNVLYDWGASVSMISEEAVEVMGLVSTKQAKRIIKGLGGATTVSKGTCTLGLVARNGDRKTVTAWEVGEIASLPGGEPPEDVDEQFPGLRYLSEPNCLIQKAGPVHLLIGMDHAHLMPEHVAESADLSSQLRLMSSMFGGQHILVGEGAPRLSWVDAMDADERYEAAANRRRKREDCR
B570J13883_102760	B570J13883_1027601	F021715	TTCNPAMLEIHKEAQTCIEALMSPSQIGAGKCIQSMKVEKVDQQSYIYKTENTVIRIFSPFPDTVSTLCGHTLNQNAGTLKEGYTDLSFKSDCVLYTSQMVIYSPYKPTIEETIKPLLSTPDLSMEIESLLSDIHEVHRINLTTLGQEFQTLNIDIQNELXDLSNVNDVLQRAANIKEITIFDPTDIKLEKITESNT
B570J13883_102822	B570J13883_1028221	F004758	LNDTRMEDSLLQYIDKKHTQVDWYSTITTLHKTGSKIGYTLDHYRRVLHRFISYFKPEMNQLGQKMGLHELARLLMTSTMPVNDREMVIHEIKKLTRRQTESLRVPMSNLYSLATTYYNDDPDAESQRNKLLFNGLQHFTTGVTKEKLTRLIKYSQLQKIKLDYHDTLETCILSEKTNGEPAEDLQFGQSKET
B570J13883_103061	B570J13883_1030611	F048115	REHPISRKWAAVLPPLPQNFGVSQDTIFEFLTRPLRPEPQDIHDRTHKKLNEPKTVQEMYEMSQKQTPEERFHSAQIMLHQWLAKYAKNREPKLHTAKVFATKLAIDIKKHELVLQKIHEIMETVYADLKGKQIYRDIQRNLMEASKHYLSCTKQPLTEKSLQNFHTSLEKLFKLISP
B570J13883_103103	B570J13883_1031031	F011472	MDPFAQQVQRIENNDKVKEIVEALRLIPIADNDVKTQINASLEKILTPAAHKIPETQKKITEFEFTEPEFSYHDIAERQKYRPMKHGIHYLDEDSTLYYNSAIEASAWEDENVVATTARDAAQAAAETPAAI
B570J13883_103167	B570J13883_1031671	F019090	TEKTMPFFAQGMGTVLCPICLYSSTSASEVMLPAFFGRKAFVQHYRELHWDHSIASGLSSPTQLGTRIYQAHLVYTLCIAHLCLSGAMEDNVNGHPFLSLAGVRFSTHLRKVLVAPTIPMEDQDSEEYCEVTALAEEMMRPSGSHHE*
B570J13883_103268	B570J13883_1032681	F006499	QYLEGIKRIKMPSDPKDKVGMLTYVKNAYSRLVTLTKLEVDRGQPVPGLEDYFLSNQFLKRVHRLLPEELGSRFLMKIQENGESYYLMKGKPYMDRIIALLRCYYKSLEIALEDRPDLPIITKSGTVSSAGINLMSTSGYASGQESHSPVEPPREPAQLTVMAAVANT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001253: Freshwater microbial communities from Lake Mendota, WI - 20AUG2008 deep hole epilimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences