3300001252: Freshwater microbial communities from Lake Mendota, WI - 8OCT2008 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300001252
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0054983 | Ga0000642
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 8OCT2008 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1717017
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004315	Metagenome / Metatranscriptome	444	Y
F018650	Metagenome / Metatranscriptome	234	N
F023783	Metagenome	208	Y
F049428	Metagenome / Metatranscriptome	146	N
F070903	Metagenome / Metatranscriptome	122	N
F102145	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J13878_10003	Not Available	3568
B570J13878_10100	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1021
B570J13878_10190	Not Available	809
B570J13878_10316	Not Available	670
B570J13878_10600	Not Available	539
B570J13878_10663	Not Available	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13878_10003	B570J13878_100034	F102145	MVSYKIHVLKILAEKMATEKQEATETLLYNFEYPMITECGAVKITDHHVILQFPEKPTVHVEHAVKLRRNITLYVENGQCFSLDWIPIQTVTDFFRVKEMIEKCLQSYSYLLDNKTHFSPHTFSVNPINYYESLTTGFTTNSFSLSCFEHTVDTCIQLSVINKECDKKEIPLHFQLCIGKHVVFCTERDLKCVDKAKDVHFIVQFILQKMLNISLL*
B570J13878_10100	B570J13878_101001	F018650	INFTYLDQCRTCDRNGGPAKESIDHMYVDFIEEELLPEINSLAEKYADWWTFKPSSPLKAYLSDREIVMDEYFSLEELRYRVMSILEHAAQFLNSDVIVLADQELQMVFDSWYIFVPDIIENHLLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI*
B570J13878_10190	B570J13878_101902	F049428	NKQVDTAHVLKFITWTLNINITVVKIIFRLPKNTGHQRFCLSYGFQNTFIKIIKTPNSFKPIHVITYKNKYYILNQLPTIFPLLLRNVNPQDQLTYKRIPVRADQILDIVQGRTDHLNFPFTINIYTAYSYTGKASNEIRTNMIGQLLAKKNTEEIFHVFLTPDIEQRNVIKINALENVKHSAKFDKHDLFTNTLITEGDKTVFKRSPKEVLLNQKNCICEHKETQDYSPLSRDRNLGIEQLL*
B570J13878_10316	B570J13878_103161	F004315	EAGQALACLYSGARLYKGPGQANLSQSAATRSTGNISVWIQKVDHSNTRGIVSSLFFSRSEITAALSLHYQHLMKTKG*
B570J13878_10600	B570J13878_106002	F070903	IDSIPPSDLDVETQPAENPPQAPATHEIVDEFDDAQINNNKTNELAFVNSLHAHRDLSKTFRDTLRSRKEKLITFFLSKHDQYVKIPGVGEHTESDID*
B570J13878_10663	B570J13878_106632	F023783	MHYAWVTYVLGLSYSCVTLVLRLRYACVTLALRLRYACVTLVLRLRYACVTLALHLGYTWVTLEFNINIKLSRQLSVCHQSDVSLSSLCRLSSIGQHALRL