3300001249: Freshwater microbial communities from Lake Mendota, WI - 21JUL2008 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300001249
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0055031 | Ga0000688
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 21JUL2008 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10190933
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053089	Metagenome / Metatranscriptome	141	N
F071999	Metagenome / Metatranscriptome	121	N
F102145	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J13885_101226	Not Available	1118
B570J13885_102233	Not Available	710
B570J13885_102383	Not Available	685

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13885_101226	B570J13885_1012262	F102145	MITECGAVKITANKLQFSEKPTDYVENSLTRRRNITVYFENFPVFSIDQILIHTGRDFYRVKEMIEKCLQSYSYLISKTYFSPHSDWFNSIKYYKTLSTEFFTSNTFHLSCFEHTFITCIELSVINKECDEKEIPLHFQLCIGKHVVFCTERDLKCVTQAETVHFIVRFILQKLLNILLL
B570J13885_102233	B570J13885_1022332	F053089	LADQELQMVFDSWYIFVPDIIENHLLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI*
B570J13885_102383	B570J13885_1023832	F071999	HSLTHWYTLTFLIIFNLINNLYLCPLGISVYVQTAGPSDFQNVSGISFLPANFTIDEDNFSSITEHSLVVLDDFSFKFVNKKQAKINFLKVVNYLILVIHNLFSNNLSNDILCAHHVFLTFTNLGYLIMR*