3300001248: Freshwater microbial communities from Lake Mendota, WI - 18JUL2008 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300001248
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0055064 | Ga0000678
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 18JUL2008 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9132121
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003691	Metagenome / Metatranscriptome	473	Y
F009530	Metagenome / Metatranscriptome	316	Y
F011762	Metagenome / Metatranscriptome	287	N
F018650	Metagenome / Metatranscriptome	234	N
F029991	Metagenome / Metatranscriptome	186	N
F043404	Metagenome	156	Y
F053089	Metagenome / Metatranscriptome	141	N
F066479	Metagenome / Metatranscriptome	126	N
F083751	Metagenome / Metatranscriptome	112	N
F102500	Metagenome / Metatranscriptome	101	N
F102592	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J13873_100433	Not Available	2101
B570J13873_100491	Not Available	1845
B570J13873_100607	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1517
B570J13873_100870	Not Available	1109
B570J13873_101617	Not Available	729
B570J13873_101825	Not Available	678
B570J13873_101943	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	652
B570J13873_102132	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	623
B570J13873_102526	Not Available	563
B570J13873_102704	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	541

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13873_100433	B570J13873_1004331	F018650	YVDFIEEELLPEINRLAEKYADWWTFKPSSPLKAYLSDHEIVMDEYFSLEELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
B570J13873_100491	B570J13873_1004911	F053089	LLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI*
B570J13873_100607	B570J13873_1006071	F011762	MSKSKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDETSVRKYIGELEVETKMDKLENSLIKNVLSKKDKKEVLASKELSDMVPALEVLVDANF
B570J13873_100607	B570J13873_1006075	F003691	MNSRNTNEFNQFTETAYNTSRNEKPQYKNFAASKMSQSVKPNSIVEFTDFMGRKHIVAVRNNTELKKQMKFFGMLKKESATIKQIISEYPIKLGQIEKRFVAECKRELKAFGLTKRAIDIVLG*
B570J13873_100870	B570J13873_1008703	F102592	MNVVDDDDDITVPDPVYMKWPKNFTCQDSPTPVLKIQYEGLSNTTSPHRNPAFITLTNKKAFTIPSCNYAIIHFPVLVRTSLPAVSILYXNDFLYKXGLTCVINQIPTNDTLLHIKVFNXXLLPLTFEKESLQFICHTVLAKYP*
B570J13873_101617	B570J13873_1016171	F029991	MHEKTLFPGDETSHSFANNKYRRHMLSFPMYPFRTLCPRDAYNMNILKGGNSEFDQTSPLLPANTQLNIKFTRRPAAHLLSYMLPTNLNLNLGASHNALTQTERNNALNFTVTTPVDTQYTITGIAINIQNMYLQVSKIFYIKILKYLKLKIFEIVQYLKLKLKYLK
B570J13873_101825	B570J13873_1018251	F083751	MVIQIAFLILHKISPLENALTEMTLRKFVYLFKNLSSTYTVISRIGKFFVS*
B570J13873_101943	B570J13873_1019432	F102500	LHTFFFLIFFRKLFMRLGGPEALDFFQSVQKANFHFAYVNSARNFIINRVENLFNNTRRAIMFANKQTFLIHDAEQDCSQTLSSTEEKVNTTISDFIQSTYPKQKYLKIVANIFEKHNLVNDDLFFVNFPDIHLADFCSFINNKFDKKENVRMIKLCKYIQTQKIRLPNVCVKNSRAKKYLC*
B570J13873_102132	B570J13873_1021321	F009530	TMTMTITYSIWQGSKLLSIDNIAHEVKAIDHLIASLNDSELGKVKKFTANIQKIEAGK*
B570J13873_102526	B570J13873_1025261	F066479	FFFCRAGDVQHIQENRLFFTPGYYYRPNQLKSMTCLLGNTDARTVYRNFDLANLNVNLGDRTHMLYNRYLCYNRFLPPDEKHYFAHLATNTLAVAPGSATDQKGAFNIFPMSLTTEEMNKSTSSALGK*
B570J13873_102704	B570J13873_1027042	F043404	MIDTTDELLNELAYHFVDLHNVGGIELEQWDTAYQFVKHFYNTEEV