3300001247: Freshwater microbial communities from Lake Mendota, WI - 19JUL2008 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300001247
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0055063 | Ga0000682
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 19JUL2008 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8277861
• Sequencing Scaffolds: 21
• Novel Protein Genes: 24
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	19
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F002931	Metagenome / Metatranscriptome	519	N
F003781	Metagenome / Metatranscriptome	468	N
F004315	Metagenome / Metatranscriptome	444	Y
F004578	Metagenome / Metatranscriptome	432	Y
F004758	Metagenome / Metatranscriptome	424	N
F005196	Metagenome / Metatranscriptome	409	N
F007021	Metagenome / Metatranscriptome	359	N
F008069	Metagenome / Metatranscriptome	339	N
F013607	Metagenome / Metatranscriptome	269	N
F015168	Metagenome / Metatranscriptome	257	N
F018650	Metagenome / Metatranscriptome	234	N
F022360	Metagenome / Metatranscriptome	214	Y
F022592	Metagenome / Metatranscriptome	213	N
F023783	Metagenome	208	Y
F027111	Metagenome / Metatranscriptome	195	N
F030674	Metagenome / Metatranscriptome	184	N
F035561	Metagenome / Metatranscriptome	172	N
F046199	Metagenome / Metatranscriptome	151	N
F056323	Metagenome	137	Y
F066278	Metagenome / Metatranscriptome	127	N
F066479	Metagenome / Metatranscriptome	126	N
F083751	Metagenome / Metatranscriptome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J13881_100594	Not Available	2550
B570J13881_100820	Not Available	1509
B570J13881_100829	Not Available	1493
B570J13881_100908	Not Available	1335
B570J13881_100914	Not Available	1329
B570J13881_101120	Not Available	1052
B570J13881_101377	Not Available	865
B570J13881_101445	Not Available	827
B570J13881_101557	Not Available	784
B570J13881_101621	Not Available	760
B570J13881_101828	Not Available	696
B570J13881_101981	Not Available	659
B570J13881_101990	Not Available	658
B570J13881_102090	Not Available	636
B570J13881_102217	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta	613
B570J13881_102473	Not Available	571
B570J13881_102892	Not Available	520
B570J13881_102912	All Organisms → cellular organisms → Bacteria	518
B570J13881_102942	Not Available	514
B570J13881_103051	Not Available	504
B570J13881_103073	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13881_100594	B570J13881_1005945	F018650	HKYVDFIEEELLPEINRLAEKYADWWTFKPSSPLKAYLSDHEIVMDEYFSLEELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
B570J13881_100820	B570J13881_1008201	F046199	MVKNDFLGNFMNIFVQRQLAPFLYYNKEKFFQTYEISKEFDFNYITPFNNKRPILFYPSDRAPKNQKAAYLSIFCPVSSKEIQLSFKNIYEKTTTIKYGWTMFSICSDDFMDLSQWSICTTHKPNEITLVSCNKPKFNMYILNNNREPMSLLNLSLSSLYQNKLNSALNLTKYAVPKTLSQQAPPCYLFHINSRDLSIEYHGRCNCCGYFISSHISNW*
B570J13881_100829	B570J13881_1008291	F015168	IEQILEQLTANITLRTEDIPKRPITLPPIYTELSEIDVYTEMARLDLQYDDLRTDKPRTASLARLCKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKTGHMIIPELYHYNNCMCASDCIANNQESLHFLRICAPRSLRQQYAEADHLPDARNAVSIGKKYGNSHTVYYSSVSVSGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLVEPFMGPQACPYCPTILQITEPKDYLLHLFDHHAILTEAYFTCPGCIAICIFNKETYPAHYTEVHSQASALIIMFTETATHIRTQQALQLSLFIEVTLRLESFYPAEKQNKEPHYVSYLGGYSSNKKALFREVQNEQIKRNPLDLMHQMEETLSADFTTTEEIFNIQRPSSPIFLKL
B570J13881_100908	B570J13881_1009081	F013607	ARVTEKPPGLYRTAPPRSGRPRSSSREKAYSGSQRDVNEGTINVLRSMHAKLMTMQGQTGKNSGLPYFDGTLKDYPKFRRRWHTFQETYHKATPQRELVNLFRENCLEKKVADRLRSAETMAGCWRVLDPFYSRPTQYVQDLMSEITATRKIQYSEYERLYEYYALIRGHITEARKANLEETLLTQANIALMEQPLHMREIEEWRNRQAKYAPRYHAEAFVEFVQDREEWALKNVAYSTAPSSQSSSGEGQKGRKSYDKKEAKVMAVKATTKEEPHFPPPRRWSPDNPWGRPCIMDECSEEHAPPSCAVFKSKTPEERLAAVRRRELCVLCFRHLDTKRCWSLGKLNNCNVRGCGRGHNYLLHDVLQNEEAMMVSAVPGQTGRQESSLRCRQMVAAENEGQCFRLNVLYDWGASVSMISEEAVEVMGLISTKQAKRIIKGLGGA
B570J13881_100914	B570J13881_1009142	F004315	MKVVSDVLLLLCLHKFDLRVTAEAGQALACLYSGARLYKGPGQSTLPQLATTRSTGNISVRTQKVNHSNTRGLVSSLFFSRSEITAALSLHFQHLMKTKG*
B570J13881_101120	B570J13881_1011202	F004578	MGAGQNETGARASFGFGGKVSETGTRKERPLEGGSRSRGVKEMVDVFRCLLAPHCGDRHRAMACEKFKGLSLPHRQSIIAEQELCANCLRHSENDIRRRKECLRRAAEPHWVGSSVRRPGRTPSPVEEMPTLGASAAGKVIFACRMEVMVKTKADLRQGEYGADLSVLFCP
B570J13881_101126	B570J13881_1011262	F008069	NTLPSKYSGATKAQWKTLPVPRQPTTITKKPSTKRIATIKTPNTPYYVEEQLLEQDSFLFSTSIELSVNKIKPEKNYKTRYKSSFQSXRKGILYINLPPEEXSNKKVRFSRLEIKFY*
B570J13881_101377	B570J13881_1013771	F004758	SAIETSAWEDENVVATTARDAAQAAGNTPAAIQTAYDNALRAQQGINTRIFAQPPRWVLIKRKALNDTRMEDSLLQYIDKKHTQVDWYSTITTIHKTGSKIGYTLDHYQRVLHRFISYFKPEMNQLGQKMGLHELARLLMTSTMPVNDREMVIHEIKKLTRRQTESLRVPMSNLYSLATTYYNDDPDAESQRNKLLFNGLQHFTTGVTKEKLTRLIKYSQLQKIKLDYHDTLETCILSEKTNGEPAEDLQFGQSKETILVFQANIAPVDSLLDNDITPIEFTLANPN
B570J13881_101443	B570J13881_1014431	F003781	FLTRPLRPEPQDIHDRTHKKLNEPKTVQEMYEMSQMQTPEERFHSAQIMLHQWLAKYAKNREPKLHTAKVFATKLAIDIKKHELVLQKIHEIMETVYADLKGKQIYRDIQRNLMEASKHYLSCTKQPLTGKSLQNFHTSLEKLFKLISPIQQEQLQYQTENEIKINFITNLPSVQNYNTIEVNPKVRYNLHPTAELSPKICLQSNGLDIPLQEDEIFAPYELKKVDLKIRFQFPKNHCALLINKSSARLRYEVNVQLGLIDIGYHNYVAAVIQNM
B570J13881_101445	B570J13881_1014451	F027111	MDIASFYGIVSYAVGVSLILSIAGIKSGRRFFHLFNNRHAARHADQIVENGHGERVNHRRRPPSRDQDPLDLMMGGMESVNRDRVFTDNPEVSGQESGRGSTSRF*
B570J13881_101557	B570J13881_1015571	F022592	AENNVWERNSRRGNSQPRAVGARGATPVEPVRSAGREESAAPREARELYHSQSPWGLEANRDAERRPELLAEEKALVEELLKSAELRPLVSLVEARGLGLLRSAREGDELRTGANMSALLSAVASGKEEIQRIGRDRGWSAGITEEVLDRLQAMVREPIQMGSDVIMSSIPPKWREQATRRASEASRVIQKMTCDITTEDWSLERCQDYLVELEMATCGAMMALRLTDNDICSERVSQQVEHLSSKAREAKNMALELRQK
B570J13881_101621	B570J13881_1016211	F004315	SDVLLLSYLDKFGLSVTVEAGQALAVLYSKARLYKGPRLAGLSQSATTRSTGNISVWIQKVGHSNTRGTVSSLFFPAQNNCCT*
B570J13881_101828	B570J13881_1018281	F002931	GNSDEAHDEEPSPYEHLGEDRPRLCQQQVPLEVNGXVGFVHVLYDWETPNTLMRIEAARRMNLQSIRIPRRAIKGYQGVGTITDSAYCVPLLDADGNVRVIRAYGVEEIAIVVRTRLPPVAVEIFPVIRLAAPWMETRAGHVDLLIGLDNKEWLPTHVEDSWDPDDDMRLMKSAFGHRYMITDGWGRDLLPPDNSPEDQAGAQGGEDEQVETAQEVQLPEYRGWSQGTGVS
B570J13881_101981	B570J13881_1019812	F056323	VVALWAADGYIPHVMREGMPLFDPVAVGRHIAKQLNELNKIDDGNTTDTTTN*
B570J13881_101990	B570J13881_1019901	F035561	MDLVTPNFRLAESVLETLSESQLECYICHHGPREFETQKLRDIVAANMQPDIYPKRKDVYLALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTDFGQPRWWTSYEWALGGRRPTFRGKTIWNWQPL*
B570J13881_102090	B570J13881_1020901	F005196	PEARSLRSRENEAAQQFRYVDELCAELELAVSMGNVREVKCQRRALAAGLRQAEEAIMRIAEAHRWTKAELDHALDDVRGHALPQKEEADDFLRADEQEKRGQWMSECLRMTQNAINLASQANRALTVGDWSRQDCEEFLDDLEREFKKVNKELDTYPSMDCEPKVKKGLADCRLRLEAARYEAEKVVTRLLRDHDAWGHVSREGRPRERIP
B570J13881_102217	B570J13881_1022171	F023783	MHYACVRLELLLGYACITLALRLCYACVTLVLRLCYACVTLALRLDCTWVTLGLCYACVTLALRLLYACEFNINIRLSRQLSVCHQSDVSLSSLCRLSSIGKHALRMC*
B570J13881_102253	B570J13881_1022531	F066278	MAASCSDGGAAVCSDSDEHIRHVXGTVALKKVAAEGNLYTFRRPDYSAEEWRFLYLTTSTDLYIDSIRLVGFCGAGGINWAIVTRMKESDNPPRE
B570J13881_102473	B570J13881_1024732	F083751	MVIQIAFLILHKISPLENALTEIMTLRKLVYLFKNLSSTYTVISRIGKFFVS*
B570J13881_102892	B570J13881_1028921	F007021	EAGQTAAPVLGLGLEAIQGMTNAMNAIANQVIRSSGRSGRNAGWPYFDGTFRDYPGFKRKFESFQMTYHRGTPTRELFQQFREMCLPEKLSIKIKSANTMENAWTRLDAWFGDKNLFIKDLMQDIRSVSPIKDGDDERLMDYYVTLQAHIEEAHSAGALGMLLIPANVELMVL
B570J13881_102912	B570J13881_1029121	F000264	TMAGKLYTSEVWLKKRFLIDKKSPEEIAKECGASVETIYVYLAKFGLRKSRR*
B570J13881_102942	B570J13881_1029421	F022360	MVRAGDNPMQKLAMMMAVMILGMSPAHAYSISADPGSREVGGLMEMMPPLARVYSDDWTLTARNTVSSIATEGYRPVEPGGYFVERTLQQAQLGIEDLERS
B570J13881_103051	B570J13881_1030511	F030674	QSWDLKMREEKGPGRKINGLFCWTAKDSLILHEVAKAAGLEGRGYGKKVDSLYVRDMESTCAYCVPLVDWKGEVQYLWARGVDYIARLAGKEDPRKWYAQFSELAMARDTEAERKAPIEMMIALDNWKWMPVRQPLRLYEHSHDKKVKNRRAQARTQFGKRLLLLPLV
B570J13881_103073	B570J13881_1030731	F066479	VQHIQENRLFFTPGYYYRPNQLKSMTCLLGNTDARTVYRNFDLANLNVNLXDRTHMLYNRYLCYNRFLPPDEKXYFAHLATNTLAVAPGSATDXKGAFNIFPMSLTTEEMNKSTSSALGK