3300001246: Freshwater microbial communities from Lake Mendota, WI - 23JUL2008 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300001246
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0055062 | Ga0011697
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 23JUL2008 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6511556
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F018650	Metagenome / Metatranscriptome	234	N
F049428	Metagenome / Metatranscriptome	146	N
F053089	Metagenome / Metatranscriptome	141	N
F083751	Metagenome / Metatranscriptome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J13874_100548	Not Available	1392
B570J13874_100662	Not Available	991
B570J13874_100756	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	817
B570J13874_100783	Not Available	783
B570J13874_100838	Not Available	723
B570J13874_100940	Not Available	643

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13874_100548	B570J13874_1005482	F018650	HCRTCDRNGGPAKESIDHKYVDFIEKELLPKINSLAKKYTDWWTFKPSSPLKAYLSDHEIVMDEYFSLEELRCQVMSIIRHRAQLSNHNVIVLEDQELQMVFDSWYIFVPDVENHLLAHVIPAPADISNDLQNKHMTEEFYINSPVDLLYKDPSSVFWILPFVDFAMNQSTGNVRSWKKLLCMFTKFCLNNTTYFTRVSDSIIRINENTCLTSLFGFKYFHRSQIEHLLKKITKFLGRKNSMVQSCHFIKHNPVFNKTTKHQNVFAFIDDIINKNNDMMPDFQTGLYI*
B570J13874_100662	B570J13874_1006621	F083751	EEMVVHIDFLILHKIFPLENALTEIMTLRKFVYLFKDLSSAYTVITRIGKFFVS*
B570J13874_100756	B570J13874_1007562	F002515	MKKNAEELRRLMELRRSNAASAVPNKKKYNRKKCQSQMLKLSKESE*
B570J13874_100783	B570J13874_1007831	F049428	REIRNKQVDTAHVLKFITWTLNINITVVKIIFRLPKNTGHQRFCLSYGFQNTFIKIIKTPNSFKPIHVITYKNKYYILNQLPTIFPLLLRNVNPQDQLTYKRIPVRADQILDIVQGRTDHLNFPFTINIYTAYSYTGKASNEIRTNMIGQLLAKKNTEEIFHVFLTPDIEQRNVIKINALENVKHSAKFDKHDLFTNTLITEGDKTVFKRSPKEVLLNQKNCICEHKETQDYSPLSRDRNLGIEQLL*
B570J13874_100838	B570J13874_1008381	F018650	SSPLKAYLSDREIVMDEYFSLDELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTG
B570J13874_100940	B570J13874_1009402	F053089	IIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI*