3300001243: Freshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300001243
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0054400 | Ga0000632
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5446885
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004315	Metagenome / Metatranscriptome	444	Y
F004758	Metagenome / Metatranscriptome	424	N
F004840	Metagenome / Metatranscriptome	421	Y
F006505	Metagenome / Metatranscriptome	371	Y
F013061	Metagenome / Metatranscriptome	274	N
F018650	Metagenome / Metatranscriptome	234	N
F028718	Metagenome / Metatranscriptome	190	N
F035561	Metagenome / Metatranscriptome	172	N
F036201	Metagenome / Metatranscriptome	170	Y
F049428	Metagenome / Metatranscriptome	146	N
F066479	Metagenome / Metatranscriptome	126	N
F079377	Metagenome / Metatranscriptome	116	N
F083751	Metagenome / Metatranscriptome	112	N
F098293	Metagenome / Metatranscriptome	104	N
F102592	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J13890_100105	Not Available	2404
B570J13890_100411	Not Available	1499
B570J13890_100652	Not Available	1256
B570J13890_100953	Not Available	1069
B570J13890_101676	Not Available	808
B570J13890_101736	Not Available	796
B570J13890_101865	Not Available	767
B570J13890_101935	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	751
B570J13890_102091	Not Available	720
B570J13890_102347	Not Available	676
B570J13890_102468	Not Available	658
B570J13890_102933	Not Available	598
B570J13890_103600	Not Available	530
B570J13890_103752	All Organisms → cellular organisms → Bacteria	516
B570J13890_103947	Not Available	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13890_100016	B570J13890_1000161	F098293	LAKYQFKRGSPLQEYLQTKMREKYRIPTITFTLQNLISDLGGIINKEQLFDPLNPDIILCDSDLEVALNLKALRVTDLKHYILSQLVCIVPYQTSFKNPYYAIETRSDRNRRYFNKLEIQFKQMDQQMSQRVFKEAESYKLKPLLKRALKRMPSFPHHQRTFKF
B570J13890_100105	B570J13890_1001054	F018650	NRLAEKYADWWTFKPSSPLKAYLSDHEIVMDEYFSLEELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI*
B570J13890_100411	B570J13890_1004111	F035561	FTKYASSPDLIIFFSLYFFSFLSFFCNMDTVTPNFELANARLADLSERELESYLCHHGPRRYDRNELRTIIAANMQPDIYPERINVYLALAIYLYRAGHTRTVLNALQFEGFAPGPSPDRRMDESTNFGQPRFWTSYEWTLGGRRPSVRGRRTSMNWQLL*
B570J13890_100652	B570J13890_1006521	F049428	YYLHSDALLHHIWKINQKKFPTFQDLTEQLQSTSREIRNKQVDTAHVLKFITWTLNINITVVKIIFRLPKNTGHQRFCLSYGFQNTFIKIIKTPNSFKPIHVITYKNKYYILNQLPTIFPLLLRNVNPQDQLTYKRIPVRADQILDIVQGRTDHLNFPFTINIYTAYSYTGKASNEIRTNMIGQLLAKKNTEEIFHVFLTPDIEQRNVIKINALENVKHSAKFDKHDLFTNTLITEGDKTVFKRSPKEVLLNQKNCICEHKETQDYSPLSRDRNLGIEQLL*
B570J13890_100953	B570J13890_1009531	F004315	LCLHKFDLRVTAEAGQALACLYSGARLYKGPGQANLSQSAATRSTGNISVRIQKVDHSNTRGIVSSLFFSRSEITAALSLHFQHLMKTKG*
B570J13890_101676	B570J13890_1016761	F079377	MPQ*SFFQTAGPTDFQNVXGISFLPANFTIXEDNFSSITENSLVVLDDFSFKLANNKQAKINFLKVVNYILFIHKLV*
B570J13890_101736	B570J13890_1017361	F083751	MVIQIAFLILHKISPLENALTEMTLRKFVYLFKXLSSTYTVISRIGKFFVS*
B570J13890_101865	B570J13890_1018651	F013061	SIEKNGHGKRYQCLMCLPKYKLIWACKTTYQHLEKHVQAVHPKQHQTYKELMAKKSGYKRKRSPSPSQSTSQSPKVDHSVSKRIKTPGGGGTPVLSFYSQQDYDEDAVIEVVMNMLPFEVCAML*
B570J13890_101935	B570J13890_1019353	F006505	MTLASLKKIQANRVLGIDASTNSIAFCLMENDIPLKWGKIDLV
B570J13890_102091	B570J13890_1020911	F004758	MGTNQGKALNDTRMEDSLLQYIDKKHTQVDWYSTITTIHKTGSKIGYTLDHYQRVLHRFISYFKPEMNQLGQKMGLHELARLLMTSTMPVNDREMVIHEIKKLTRRQTESLRVPMSNLYSLATTYYNDDPDAESQRNKLLFNGLQHFTTGVTKEKLTRLIKYSQLQKIKLDYHDTLETCILSEKTNGEPAEDLQFGQSKETILVFQANIAPVDSLLDNDIT
B570J13890_102347	B570J13890_1023471	F004840	KGKLMYKLTCAYDSNAPHWSAEYENEFGAWESFFRFTDWGMANEYSTVNLSTPTGKMYTKVFYRNGMVSVK*
B570J13890_102468	B570J13890_1024681	F028718	ADHLPDARNAVSIGKKYGNSHTVYYSSVSVSGTVTPQMICRQPITELTRKSPIFRTPQYSHVDMSNDLHLIRAIGACLSRQEIHQYTKNFTESCKMDETTEETGNLYRFPKMNRNRQNTDILSLNPSYNSLDQALANEPLAEPFMGPQACPYCPTILQVAEPKDYLLHLFDHHAILTEAYFTCPGCIAICIFNKETYPAHYTEIHSQASALIMMFTET
B570J13890_102933	B570J13890_1029331	F102592	DDDDITVPDPVYMKWPKNFTCQDSPTPVLKIQYEGLSNTTSPHRNPAFITLTNKKAFTIPSCNYAIIHFPVLVRTSLPAVSILYNNDFLYKHGLTCVINQIPTNDTLLHIKVFNYKLIPLTFEKESLQFICHTVLAKYP*
B570J13890_103600	B570J13890_1036001	F066479	FKKIFFCRAGDVQHIQENRLFFTPGYYYRPNQLKSMTCLLGNTDARTVYRNFDLANLNVNLGDRTHMLYNRYLCYNRFLPPDEKHYFAHLATNTLAVAPGSATDQKGAFNIFPMSLTTEEMNKSTSSALGK*
B570J13890_103752	B570J13890_1037521	F036201	EINHNLGMKPNVTIKSSAGDVLETGIDYNSSNKITLTMAQPFSGTAYLS*
B570J13890_103947	B570J13890_1039471	F004315	GQASAFLYSEARLYKGPSQSALPQLTATRSTGNISVRTQKVNHSNTRGLVSSLFFSRSEITAALSLHFQHLYED*