3300001218: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300001218
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0055143 | Ga0000667
• Sample Name: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 524133
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → epilimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010915	Metagenome / Metatranscriptome	297	Y
F018650	Metagenome / Metatranscriptome	234	N
F046199	Metagenome / Metatranscriptome	151	N
F079377	Metagenome / Metatranscriptome	116	N
F083751	Metagenome / Metatranscriptome	112	N
F100723	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
B570J13882_10055	Not Available	1085
B570J13882_10056	Not Available	1068
B570J13882_10084	Not Available	828
B570J13882_10110	Not Available	744
B570J13882_10136	Not Available	683
B570J13882_10168	Not Available	609
B570J13882_10184	Not Available	581

Sequences

Scaffold ID	Protein ID	Family	Sequence
B570J13882_10055	B570J13882_100551	F018650	EIVMDEYFSLEELRYRVMSILEHAAQFLNSDVIVLADQELQMVFDSWYIFVPDIIENHLLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI*
B570J13882_10056	B570J13882_100564	F010915	MIVVVQVGLDLYSLSYVKYMDHDVVQYVKHDLNAEDIAQFLGNN*
B570J13882_10084	B570J13882_100841	F083751	MVIQIAFLILHKISPLENALTEMTLRKFVYLFKDLSSTYTVISRIGKFFVS*
B570J13882_10095	B570J13882_100951	F046199	YPSDRAPKNQKAAYLSIFCPVSSKEIQLSFKNIYEKTTTIKYGWTMFSICSDDFMDLSQWSICTTHKPNEITLVSCNKPKFNMYILNNNREPMSLLNLSLSSLYQNKLNSALNLTKYAVPKTLSQQAPPCYLFHINSKDLSIEYHGRCNCCGYFISSHISNW*
B570J13882_10110	B570J13882_101101	F100723	ATFVPTSRPQRKNIYKKKSTLTVPCGTLSTMMNKKWTPRSLRWTDAERQEKKLQSQNARQIRWMFWRESQVLREQIEKEISEKILAKRAAIE*
B570J13882_10136	B570J13882_101361	F083751	MVIQIAFLILHKISPLENALTEMTLRKFVYLFKDLSSTYTVITRIDKFFVS*
B570J13882_10168	B570J13882_101681	F083751	LFKLLFLILHKIFPLENALTEIMTLRKFVYLFKGLSSAYTVITRIDKFFVS*
B570J13882_10184	B570J13882_101842	F079377	MPQ*SFFQTAGPTDFQNVLGISFLPANFTIDEDNFSSITENSLVVLDDFSFKLANNKQAKINFLKVVNYILVIH