3300001163: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2

Overview

Basic Information

• IMG/M Taxon OID: 3300001163
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0054861 | Ga0002899
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4197416
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000262	Metagenome / Metatranscriptome	1428	Y
F002592	Metagenome / Metatranscriptome	545	Y
F004457	Metagenome / Metatranscriptome	437	Y
F005599	Metagenome / Metatranscriptome	395	Y
F015807	Metagenome / Metatranscriptome	252	Y
F026463	Metagenome / Metatranscriptome	197	N
F026495	Metagenome / Metatranscriptome	197	Y
F029122	Metagenome / Metatranscriptome	189	N
F030583	Metagenome / Metatranscriptome	185	Y
F031579	Metagenome / Metatranscriptome	182	Y
F039789	Metagenome / Metatranscriptome	163	Y
F044087	Metagenome / Metatranscriptome	155	Y
F045294	Metagenome / Metatranscriptome	153	Y
F076660	Metagenome / Metatranscriptome	118	Y
F084660	Metagenome / Metatranscriptome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12705J13279_100014	Not Available	2526
JGI12705J13279_100033	All Organisms → cellular organisms → Bacteria	1982
JGI12705J13279_100105	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1484
JGI12705J13279_100110	All Organisms → cellular organisms → Bacteria	1473
JGI12705J13279_100156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1329
JGI12705J13279_100377	Not Available	870
JGI12705J13279_100431	Not Available	807
JGI12705J13279_100534	All Organisms → cellular organisms → Bacteria	718
JGI12705J13279_100584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688
JGI12705J13279_100625	All Organisms → cellular organisms → Bacteria	665
JGI12705J13279_100659	All Organisms → cellular organisms → Bacteria	649
JGI12705J13279_100948	Not Available	543
JGI12705J13279_101042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518
JGI12705J13279_101045	All Organisms → cellular organisms → Bacteria	517
JGI12705J13279_101093	Not Available	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12705J13279_100014	JGI12705J13279_1000141	F002592	MTEDPEVSVLAARRATQHVRLSSADDAYEHLCILALLPSLAPLHLMLADTPWPRGFGATLTNVGPLSEGFERSVASPLQPRRLCAMGRTV*
JGI12705J13279_100033	JGI12705J13279_1000331	F026495	VFGVAAASRNTRFQAARYGLTWVGLAPTDRASFAWRLPSLDHLVGAGEQRRRNFKAE
JGI12705J13279_100105	JGI12705J13279_1001052	F031579	MIIDRRTANPIARLRPIPDTDRFELFYWSNVKGRWTTFGNLGRMKLMIESAHEIVENDPMFHIPRGR*
JGI12705J13279_100110	JGI12705J13279_1001101	F015807	PHRPKMMERYGEASEARRRKPGHDRLTWSRHRRIFGGQGVRREAGSERLEENHRVVINGSNPDR*
JGI12705J13279_100156	JGI12705J13279_1001561	F029122	MLIRPAIDDTDPIRYRRPTPDGQFSGNIIDEAMRG
JGI12705J13279_100377	JGI12705J13279_1003773	F030583	LAYPMRGEVTNRVVLGRKRHGRPEHPIWMSSGGNDLGGSKLGGLKINE*
JGI12705J13279_100431	JGI12705J13279_1004312	F084660	MKNEDAAWCKMQTYESDLLDTDLLPIRTAVKSPFVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
JGI12705J13279_100534	JGI12705J13279_1005341	F005599	TKAAMGGRAIQRAVTRVKSEQAPKVLMRMPTRHHFGEGRANGKVIDRRTRSIRRGNGHGTLER*
JGI12705J13279_100584	JGI12705J13279_1005842	F044087	MVVEVVPELKEFIFEICGRPEQRVIQTLASNRTDEPFGERMRKGNAGDALDFCHLQNPQIGLPLMELIKRIVVGAEVLRHPELPAKGAVEHSTKCHTIDRAGMDAEANDPSRVLIHDDQDPVGPQRGRLAPEQIHTPETVFHVAEES*
JGI12705J13279_100625	JGI12705J13279_1006252	F045294	MGIDDESSHPELCSEVADGVTRTIVCLFREPDAGNLPVRFNEREQ
JGI12705J13279_100659	JGI12705J13279_1006593	F039789	VNLWTVGCADPRLTAPARSPMDKPGKTPRVSPALPTGRR
JGI12705J13279_100948	JGI12705J13279_1009481	F026463	MAAEQIQDGKANVKVEKQPNGQVRVVIEGLSIAGNMMDVEEGVLQYLNQAGTAIIKEALQQHDVEGDPLFCGLENGRVKGNSPRPTXHISGKRK*
JGI12705J13279_101042	JGI12705J13279_1010421	F000262	IVSCSGQDFGFLQPTPKDLCKCLPIEPDIADYRHLAKHVPIPNIAAQEVSVEIILTWSQDPVIPPDAPRTGREQEVFHIANAYLQNASVNALDCDVSMEISHTADKTAPRMIVETPVDSEYCSARQNLQAQLKQHGFLLDSQHGGELPQALPVDVLGMAFEDFEHDRGHVAT
JGI12705J13279_101045	JGI12705J13279_1010451	F004457	LILCAWTIVGLLFTVREIVVASVHGGHVNWVIVGVIELVYWNVWAACTPLVVALAKRFPLTGQRFVSHIAIHTVTSFMMAPLGSVTAYFLSRGLLGLLFRMTDPGALRLLSTFTVSVLSMSFTGILTYWLVVGLYQSVHFYQAAMERQ
JGI12705J13279_101093	JGI12705J13279_1010931	F076660	MDAQIVHGLKMDAQKTYVLWLNRSTEEQAFNGRGTRARQVAAHLSAEVRAV