3300001142: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1

Overview

Basic Information

• IMG/M Taxon OID: 3300001142
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0054858 | Ga0002984
• Sample Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1720555
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F025163	Metagenome / Metatranscriptome	203	Y
F092578	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12702J13316_10019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2368
JGI12702J13316_10279	All Organisms → cellular organisms → Bacteria	724
JGI12702J13316_10388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12702J13316_10019	JGI12702J13316_100191	F092578	LKRRKKKGGELPVDLVKLVKIAISPVLGKGLAEFEVAFTNP
JGI12702J13316_10279	JGI12702J13316_102791	F025163	AMQLALAFLEPSPPARPSPSQKLDAETRAEALNILARIIAQACETTQHTEATDE*
JGI12702J13316_10388	JGI12702J13316_103881	F000321	VPKRRSANFGVYNVRLLSSLDKLLRDKPRFMGELSTSINDALLAVDLNTVELVTLQSRQKQTGRETQVVILNRLRKRIHDVAKKRNCSMNQLVNSALLVFYSKGGESKLKKPAKGRDSSVHSYDRMTEAERRELHQMLAELSAMQSVPFEAEEPNGSYYEYDRNLKATVKVTPD