3300001140: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3

Overview

Basic Information

• IMG/M Taxon OID: 3300001140
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055382 | Ga0002921
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15948097
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F012993	Metagenome / Metatranscriptome	275	Y
F042304	Metagenome / Metatranscriptome	158	Y
F058359	Metagenome / Metatranscriptome	135	Y
F071047	Metagenome	122	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12675J13321_100280	Not Available	1289
JGI12675J13321_100500	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	970
JGI12675J13321_101417	Not Available	654
JGI12675J13321_101803	Not Available	603
JGI12675J13321_102455	All Organisms → cellular organisms → Bacteria	546

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12675J13321_100280	JGI12675J13321_1002801	F002654	MSKGKRPKQVFKVPKLLLSEIKDVLHLNYQEIGLEAAIF*
JGI12675J13321_100500	JGI12675J13321_1005001	F042304	MTKLINAYRKLPSATNRAKLQNYLNKHMMAICVATPDEIEFLKTHEFRM*
JGI12675J13321_101417	JGI12675J13321_1014172	F012993	MNTSISTKLTALALALMVNSVLMGSMAFLFNAQLQQPTAVTALASTAATFANGVA*
JGI12675J13321_101803	JGI12675J13321_1018031	F071047	MDEKYVLDIKNLIEFSSSLTYVGNYEKMTCLLDNSFNKNYYEYSKIIYGSICPDKFTNKKIFLNNDVKLTNPFNKLLFVVKDKEALLKNISDKGYNVNQGPQK*RGQINSINSFLNYLDTDYRKSLYNHSRLHYYKGNLNKS*KDETLTKEHFTFRNIHQNIGNIK*
JGI12675J13321_102455	JGI12675J13321_1024552	F058359	MISAWECFHFATLELVRSTPIKQRLVCAYRRYLASLPPEEVPAEIRESYG