3300001125: Marine microbial communities from the Deep Atlantic Ocean - MP0204

Overview

Basic Information

• IMG/M Taxon OID: 3300001125
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054500 | Ga0000814
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0204
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43567243
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → Nitrosarchaeum koreense	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South of Cape Verde, Atlantic Ocean
• Coordinates
  • Lat. (^o): 7.33
  • Long. (^o): -26.0
  • Alt. (m): N/A
  • Depth (m): 4002.51

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002753	Metagenome / Metatranscriptome	532	Y
F032684	Metagenome / Metatranscriptome	179	Y
F041257	Metagenome / Metatranscriptome	160	N
F049927	Metagenome	146	Y
F054946	Metagenome / Metatranscriptome	139	Y
F076187	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI11931J13222_1000318	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → Nitrosarchaeum koreense	6446
JGI11931J13222_1002647	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1971
JGI11931J13222_1007568	Not Available	898
JGI11931J13222_1015888	Not Available	550
JGI11931J13222_1016500	Not Available	539
JGI11931J13222_1018347	Not Available	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI11931J13222_1000318	JGI11931J13222_10003181	F054946	LVFLYNSDYERGVPHLPQNFAVGFSLVPQLLQDED
JGI11931J13222_1002647	JGI11931J13222_10026476	F076187	MPDCINPALTVSVIICPDGLVSLAITHFFEFISXEKFFENFKTSRNVKSFPKIPLIPDTDIFNASNLDTLFINSERKWLVPR*
JGI11931J13222_1007568	JGI11931J13222_10075682	F041257	MQEFKPNYRPLGSEEDDVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEE
JGI11931J13222_1015888	JGI11931J13222_10158881	F002753	VNNTVSDRFTPAAFEIESVKLIVSDRFTPAAFEIESVNNTVSDRFTPVVFEIESVNNTVSDRFTSAAVPVEIESVNNTVSDRFTPAAVDIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVKLIVSDRFTPAAFEIESVNNTVSDRFTPVVFEIESV
JGI11931J13222_1016500	JGI11931J13222_10165001	F049927	ILLIILAAKIVKIAVPTTYKAVGNVDKDFIEVICDPIIPLKKTVIVAAVNPKT*
JGI11931J13222_1018347	JGI11931J13222_10183471	F032684	MRLLCTLRVLALIDKFKSNFSLFRAEEVIFLPFGIITKNTLKNIIQPKITPTDKNANLDPKIFVKQNEITA