3300001121: Marine microbial communities from the Deep Pacific Ocean - MP2253

Overview

Basic Information

• IMG/M Taxon OID: 3300001121
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054688 | Ga0000760
• Sample Name: Marine microbial communities from the Deep Pacific Ocean - MP2253
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28979385
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: West of El Salvador, Pacific Ocean
• Coordinates
  • Lat. (^o): 10.09
  • Long. (^o): -99.25
  • Alt. (m): N/A
  • Depth (m): 3007.91

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012354	Metagenome	281	Y
F013096	Metagenome / Metatranscriptome	274	Y
F034217	Metagenome	175	N
F050430	Metagenome / Metatranscriptome	145	N
F081452	Metagenome / Metatranscriptome	114	N
F082562	Metagenome	113	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12180J13270_1001934	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1873
JGI12180J13270_1002100	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum	1774
JGI12180J13270_1004181	Not Available	1021
JGI12180J13270_1004282	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1002
JGI12180J13270_1004295	Not Available	1000
JGI12180J13270_1005525	Not Available	821

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12180J13270_1001934	JGI12180J13270_10019343	F013096	MLTDVVGDSAVGLSTLSQTNTVAVYXPEXPGVHDNAGLIDCPAVKDPVIHANDTVTP
JGI12180J13270_1002100	JGI12180J13270_10021005	F012354	IPKPIPIAKKAIDNLNNVGLAVFLNPTYEIVPITRPTKSPTRFKIISKKNSNYADSVTVLNKV*
JGI12180J13270_1004181	JGI12180J13270_10041812	F050430	LNHCLKNRNVMDKKLKENLIVGIKIVGMLFFLIVLITTLVWPGGVDTLANLFSAKE*
JGI12180J13270_1004282	JGI12180J13270_10042822	F082562	TVIKYIIGILITLSNILFAQVSEDSNNCFLNIELSLIHPILGGFGGTIGIEKNKFSYGLNSFGTKLNHMTKHYLLVNAEELAVYNWGIELYSDYYLKQNHAGIFLGLISSLNGFQFNDTPIPQTILVVYSVPRIGYRAYLPKKLKSFYFQFSLTTHFKVWNNKKKILYQEIDTKSIFLISQLTLGMKI*
JGI12180J13270_1004295	JGI12180J13270_10042952	F081452	RCRTLADALLLSRLFMIPVLSLAQVAREDGVISDASRIFKDPTNFNIIISDKVA*
JGI12180J13270_1005525	JGI12180J13270_10055251	F034217	VITITTAVMADHTPNAAKSNSAMFYLVNRDKINTLEIS