3300001111: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3

Overview

Basic Information

• IMG/M Taxon OID: 3300001111
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055373 | Ga0002918
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8113018
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Glomerales → Glomeraceae → Rhizophagus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004348	Metagenome / Metatranscriptome	442	Y
F029122	Metagenome / Metatranscriptome	189	N
F037452	Metagenome / Metatranscriptome	168	Y
F041096	Metagenome	160	Y
F097856	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12666J13322_100017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2666
JGI12666J13322_100119	All Organisms → cellular organisms → Bacteria	1444
JGI12666J13322_100126	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Glomerales → Glomeraceae → Rhizophagus	1424
JGI12666J13322_100150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1313
JGI12666J13322_100579	All Organisms → cellular organisms → Bacteria	696

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12666J13322_100017	JGI12666J13322_1000174	F037452	MESSFLIEVDNTSILRTGALHCYHYTLNRLPAPRLLLPRSGLERSDFVLWPNPG
JGI12666J13322_100119	JGI12666J13322_1001191	F097856	GGLEVVKLKLAMSLLGHVWTAPWQELSDVLQQVGCGHVSGLLMRQVWPLALMLCADRVPIVRMHSKVR*
JGI12666J13322_100126	JGI12666J13322_1001264	F041096	MERMCGMLIPLVKSQLNPYANLWNNLILNERFNLLKYKSEFYKHIFPQEEEREWASHRVFSSSLYDKEYEFYSPSKKYILTPIELKKLKETYSAIYDLNVNQIEVINLFIQ*
JGI12666J13322_100150	JGI12666J13322_1001501	F029122	MLIRPAIDDTDPIRYRRPTPDGQFSGNIIDEAMRRPTQIWV
JGI12666J13322_100579	JGI12666J13322_1005791	F004348	ADIPQEILSSLKIHPVDIMDEVLQIALERPIVPLEHPGVAPVAETYTGGADKDTSLTN*