3300001095: Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community TA Biofilm

Overview

Basic Information

• IMG/M Taxon OID: 3300001095
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056652 | Gp0054472 | Ga0026857
• Sample Name: Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community TA Biofilm
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 217084359
• Sequencing Scaffolds: 18
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium	1
Not Available	2
All Organisms → cellular organisms → Archaea → Euryarchaeota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Terephthalate → Wastewater → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: National University of Singapore, Singapore
• Coordinates
  • Lat. (^o): 1.29973
  • Long. (^o): 103.771791
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021795	Metagenome / Metatranscriptome	217	Y
F022444	Metagenome / Metatranscriptome	214	N
F036769	Metagenome / Metatranscriptome	169	Y
F039694	Metagenome / Metatranscriptome	163	Y
F041848	Metagenome / Metatranscriptome	159	N
F042955	Metagenome / Metatranscriptome	157	Y
F044576	Metagenome / Metatranscriptome	154	Y
F045183	Metagenome / Metatranscriptome	153	N
F048390	Metagenome / Metatranscriptome	148	Y
F049732	Metagenome / Metatranscriptome	146	Y
F051235	Metagenome / Metatranscriptome	144	Y
F052017	Metagenome / Metatranscriptome	143	N
F053724	Metagenome	140	Y
F054063	Metagenome / Metatranscriptome	140	N
F070092	Metagenome	123	N
F070267	Metagenome / Metatranscriptome	123	N
F070782	Metagenome / Metatranscriptome	122	N
F080820	Metagenome / Metatranscriptome	114	Y
F105253	Metagenome / Metatranscriptome	100	N
F105254	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12104J13512_1002926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	10121
JGI12104J13512_1012258	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	2483
JGI12104J13512_1015469	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1982
JGI12104J13512_1015893	All Organisms → cellular organisms → Bacteria	1930
JGI12104J13512_1016347	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1879
JGI12104J13512_1017026	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium	1809
JGI12104J13512_1023363	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1292
JGI12104J13512_1023897	Not Available	1261
JGI12104J13512_1028414	All Organisms → cellular organisms → Bacteria	1058
JGI12104J13512_1030247	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	995
JGI12104J13512_1030321	Not Available	993
JGI12104J13512_1030643	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	983
JGI12104J13512_1041154	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	743
JGI12104J13512_1041196	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	743
JGI12104J13512_1043052	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	715
JGI12104J13512_1045281	All Organisms → cellular organisms → Archaea → Euryarchaeota	683
JGI12104J13512_1058013	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	554
JGI12104J13512_1063798	All Organisms → cellular organisms → Bacteria	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12104J13512_1000111	JGI12104J13512_100011162	F105253	MKKIVFLLVFISLVGYLIGQYVPVEIVNNAEDYLGRQLVTRFRDEIRKSHSYTVTYSSDEPHFKVKIDTMDRYKGDSLYEGISTIYNYTILIAVNGIDIYCYSQLGYAGKDVLNEVAFQIYSDLDEFIETFKSYLIKLLEEYE*
JGI12104J13512_1000842	JGI12104J13512_100084223	F105254	MAEVATIYRLYGANGNKTSLTGKIARFGTIDGDPQSSYPCKVPPTGQIYDSFWVTDCLGITGTFTQVRDIYINGDGNFASDWELDAAHGGGLFVGVRDSGDHGLPIDEGLHGSNQYAQATGTPGLKGLAIDTDHPYYKNQTEKIRNFDQCTPNAPLLIDSGPYTSAFYSKAWVLAVRTVPTSIYGSKSPKSITVTYNIS*
JGI12104J13512_1002926	JGI12104J13512_10029261	F070782	VNWAGVNILDRDAEETTEAIHSSVHLDFTLARVYERLFKCSIE*
JGI12104J13512_1012258	JGI12104J13512_10122582	F041848	MTYPSETVTAKQYSTAVAVRGALLISIVSVAHSFVHLRIGAVGARNLEVERLNLGEFVQFEGADGALYEVRLLAVEGFDTATFLVTRIK*
JGI12104J13512_1015469	JGI12104J13512_10154693	F021795	MKKEADRIRRWRERKKAEGKSSFTVVLSRQAREILAAEKEKTGESYAVIMEKALLGLRKQAYAPPVLRHFPRREEVLARAAQDPSPEARESRVDHEGDRQPRILIDDLANYPTLEDIEREQAAKEHNGLHGLKSSEGFISRLLRSPAGPFGRKKKWFK*
JGI12104J13512_1015893	JGI12104J13512_10158933	F036769	MKRFGIILSVVVVALFLAAPGPAKLQAAQPQDILTGNWVLKFEDGREGWASFAADNYPKTGFSSKGRAEVPGFKPVDLTSSVIPEYYREGQVILYNAQAQQRPFHFVRFFLGAKGAVTGYVATFDGKQYNFKAYRR*
JGI12104J13512_1016347	JGI12104J13512_10163472	F080820	MDGKQKDGRYERWLARAAAAYDRMFCEKNQEELVTLTEREDMAVSLGKELAAFLLEEHVAADPAKVPAEASTTCCPKCGQPGMRAPQKAGKRGARLPERTVRTRAGDIEIPRERWKCKRCRIVFFSARRSPEAGHGRV*
JGI12104J13512_1017026	JGI12104J13512_10170262	F070092	MAINDRLKPVAELLETNRQKIDLMISHGMASDLAIQKRKKELYDEVMAAKEKAFKDELADLEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKSQHNKVSVLAGFKDMLKYLDGTNNAVYISETLKYKEE*
JGI12104J13512_1023363	JGI12104J13512_10233631	F039694	RDREIRSGRQAHMESNIVDTMRRYFQNDTGKTKGDIEYAILNSVKRYFEGKPPEKLR*
JGI12104J13512_1023897	JGI12104J13512_10238971	F048390	MVYLKYTGLLQYCMVRFVRTLQHRITKQGRDFYQLSIPPQVAEALNLKDGGPVTIYVQPVKRGEVQIVLAAADSEV*
JGI12104J13512_1028414	JGI12104J13512_10284142	F044576	GLEEALLVEDLHTGELVVERANGEKWVLDAKKGWCPWGYEFEGKRVGLRFGAVTSVLVNDRGEQFEFWTDKQIQ*
JGI12104J13512_1030247	JGI12104J13512_10302472	F051235	VVAIYARRLSRQILGLITILFRGPMIALLSLCRFLKFNCIFTVYPGSEKDIEGYLPPGFKWAKHLVSGKPFVAGVITTGNGLGRGLVLAVPNTVDQFKQDKKLVGTIMKNLKLTKSLTGAKTIAIAGQGPRFFKSHFPYEQPFVYGLKGRVFSVVETVERVAERHGLIKSETTVAILGVGEIGAAIIDNLEKKGYRA
JGI12104J13512_1030321	JGI12104J13512_10303212	F053724	MREIRVLVRLQVEECEGDGKFDREMMEDAAVEAVENAMRHAEGVGFPHTYEEELSVCFVDAVLYEESDDDLHEE*
JGI12104J13512_1030643	JGI12104J13512_10306431	F022444	MEAQTKNRLDRKWKKHADEIELEVIQKLKGNADYHVVEVARASLKRFGVEKAGLRKDSFVLRIETAAGTEESRRSAGGWLCFESETDALYYLFHVWFRHVKTNFTALDDAMSDTVDLVEKAMGIAVREGGFGNEVLKDMIVRALGRLASVSFTAGGYLQGGQIDAEVLEDGSKHNGGHDELARLAAAGALDVRNQKHLKMLETWMTARQA*
JGI12104J13512_1041154	JGI12104J13512_10411542	F045183	MKYKETMKRLFNRLTHPALREREIIKTLSGLPGVRPFLYEFKLGPLFLISAWLLLFHANYTGAAEEWLLYFFGGCAVVGVLSVHKAVMRFLYRIAQFEKPVEGQDRTIMVTAEAVTLLGFLMAAMLFLNEFQSSGFGM*
JGI12104J13512_1041196	JGI12104J13512_10411962	F049732	MDVLRILFNILLFTASLFAAALAVEKIYAGRWKWAAFAVLMGFILGFALVPGALIGVLEALPGGFSAANAAVLVLGGVA
JGI12104J13512_1043052	JGI12104J13512_10430521	F070267	PSVLLVLDNEDAHQHEIEQLKFKIKEQIVSRMMGRANSVVLFGKVKPGDAGSFTKVVLRMGMKPSKIYILAMALFLLDPSLESLAGRSFSRAILGRILAEELGFKSTAVERVEMGSLLIEIGRIPAVLYEIRSKTSLDEGFLSAWHPLLGLALLRKYELPDYLEETLLHTHFSFLHRSLSPLAVIDLADLVVRQSFSRHGKLVVESPLPDDTTESTLGSRIQDQFSAIGYRKFVDVR
JGI12104J13512_1045281	JGI12104J13512_10452812	F054063	YLRKTLNILIFIVICLLIAKFSKVYYMDINVKLKYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTIAIKPFIESWNDLGMNFQKGLSPYNTAKMFIDALVKAEFINSADFEMAGDDNNFTFKAIQCPYKSHCSKLIAEGKEIACLRAITLLGAMEYNKEGESLKYMYKFDFNKDAPCLVSFEKFKD*
JGI12104J13512_1058013	JGI12104J13512_10580132	F042955	MNRFVRILPAVAAALVLAWLWWEAWPDLFRSGVPSITDDAEFALLVRLTGFVAILGVAFYFAVRNLTRQ*
JGI12104J13512_1063798	JGI12104J13512_10637982	F052017	MQRGVLTRDDVERFEGELGRLIVVKKALELALVSPAIKDDQKQSYSRALLQCERTLREFRRALIAMKVGLSRWAPHRRIGK