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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300001093 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0087272 | Gp0059803 | Ga0012570 |
| Sample Name | 07SHO09A |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 14393631 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 2 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 3 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Thermal Spring Microbial Communities From Shoshone Spring, Yellowstone National Park |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Thermal Spring Microbial Communities From Shoshone Spring, Yellowstone National Park |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → hot spring → spring water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Shoshone Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.3564059 | Long. (o) | -110.7977012 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F043237 | Metagenome / Metatranscriptome | 156 | Y |
| F100050 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| SHO09A_101441 | Not Available | 1457 | Open in IMG/M |
| SHO09A_101520 | Not Available | 1430 | Open in IMG/M |
| SHO09A_104562 | Not Available | 780 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| SHO09A_101441 | SHO09A_1014412 | F100050 | MDAIIRYMVATLLAVVGGYIGYHFVPVVPFGVVGNVLFLGALFGLVVGLFGFTGFFGNLVNALILSMPLYFVLPGEWFVIWTGGNAGYALGNVFGQLAVLSVTKRIEARAL* |
| SHO09A_101520 | SHO09A_1015202 | F043237 | MDLEKTARYIAQLSRHGYRYAIVGKLVRYDREKVKRLEYDGFVFYLCRLPSKKEIVSYCLSRSEGPFRVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFINDCLNAIEKASSLTYPSPKLFTGHVNKILRQLFEVLAWTYNDRERVRAIRKKVKHMVVEALKSQYGLKPKDAMLDYARYVLKFSDVLRKKRQATKG* |
| SHO09A_104562 | SHO09A_1045622 | F043237 | KNSPEESGMELERTARYIAQLSSRGYKYAVVGRLTRYDKKIVKKLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLASKPLEFPNAPLKLHYDEKTKRLRLLAKRSFINECLKVIERASSLKYPNHKLYTAKVNEALRNLYSILAYTYNDKERIRAIKRKVKHLFVSALKENYGIEPKKAMEDYRRFVVKFSDVLKKKQRANSSTS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |