3300001076: Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575

Overview

Basic Information

• IMG/M Taxon OID: 3300001076
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054644 | Ga0002550
• Sample Name: Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5408780
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3
Not Available	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.070856
  • Long. (^o): -96.582821
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000707	Metagenome / Metatranscriptome	926	N
F001434	Metagenome	695	Y
F001823	Metagenome / Metatranscriptome	630	Y
F002517	Metagenome	552	Y
F037827	Metagenome / Metatranscriptome	167	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12403J13228_100131	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	872
JGI12403J13228_100228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	738
JGI12403J13228_100369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	637
JGI12403J13228_100457	Not Available	602
JGI12403J13228_100655	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	540
JGI12403J13228_100910	All Organisms → cellular organisms → Bacteria	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12403J13228_100131	JGI12403J13228_1001311	F001434	LLDDPRFNRNYDFVFYGFKTTFHRDLPAFEAEAAKLDRMLTHLEEDYKSITIVTHSNGGLVAMRALLNRAKDFPAKQPHKIHRIVMFTPLTENVSLTGQPDIVKLLGKQSTDVAQMQANTSSKLNSVKQDLKALLDPQDPLAKARAEAFMKDVAEHIYIVNAEGDKLVDVGPNGEKIVSETVRILSQLPTLGAPRLVTLRYSDIGGKEEDARERKSGLRNPAYVHGIVVKMGAQQDFSFFDRFEELLFDRIGTPPRNSAANVEQIRQSTQERIQDTIFEMNKFVVDKNPM
JGI12403J13228_100228	JGI12403J13228_1002281	F000707	MQTKLPLNGTIQHPDLAEALRGESGTFFCQQGGQGYIVTAAEGFSIKSLRPVGRKIVEANVSCRLLQNPGRLPKSPRMFLSSALYHNPLANSEPPKG*
JGI12403J13228_100369	JGI12403J13228_1003691	F002517	INAERDEVVDVGPNGEKIISEALRKLSQLPTLGPPRLVTLRYSDIGGSEEDAREKKSGVRDPSYAHGIVVKMGGQEHFSFFDHFEELLFDRIGTPPRNSAANVEQIRQSSNDRIGNTVFEMNKFVVDKNPMVGLAWRNISDAVQAKFRDVPEPARQKQIEDLTKQTYYVYIFLDLYARMDDLRSRGIMSPNDEMIVEWKHDWLPNLMGSEIG
JGI12403J13228_100457	JGI12403J13228_1004572	F001823	MRAFDRDLIRGGHYGQRPCVPHSKAEHMAAPTNAANVKKALANSAPSTHGPX
JGI12403J13228_100655	JGI12403J13228_1006551	F037827	RMRSFLTYLSERCKWASKGTGAVCGWVSLIVGATVAVLLWFYPRWFHDHISDRMNACVLVIVPLLAGGSVFLIRWFVSPYPIYMQVRRTLNTLTDTKKEERAKAVHGCFERSAAILKQHHSLLLSFHALSRAEGHRLESNQEVAEVCDLIQEAGYDHPFEGISPGYVPEKDWLPFLKYV
JGI12403J13228_100910	JGI12403J13228_1009101	F001823	MRAIDRDLIREGHYGQRSCEPRKQAEHMAAPTMLQTFKKVLANSEPSTHGGKADIASYACVL*