3300001074: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397

Overview

Basic Information

• IMG/M Taxon OID: 3300001074
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053063 | Gp0054415 | Ga0002536
• Sample Name: Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7442356
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Willamette National Forest, Oregon, USA
• Coordinates
  • Lat. (^o): 44.20517707
  • Long. (^o): -122.1284473
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008956	Metagenome / Metatranscriptome	325	Y
F012679	Metagenome / Metatranscriptome	278	Y
F014546	Metagenome / Metatranscriptome	262	Y
F014962	Metagenome / Metatranscriptome	258	Y
F025092	Metagenome / Metatranscriptome	203	Y
F039808	Metagenome / Metatranscriptome	163	N
F045938	Metagenome	152	Y
F061090	Metagenome / Metatranscriptome	132	Y
F092562	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12569J13230_100113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1313
JGI12569J13230_100128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1265
JGI12569J13230_100181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1081
JGI12569J13230_100254	All Organisms → cellular organisms → Bacteria	935
JGI12569J13230_101112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583
JGI12569J13230_101462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539
JGI12569J13230_101723	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12569J13230_100113	JGI12569J13230_1001133	F061090	MTPWFRLTLICCVLLCLFLGLTQAVDWNYQPVVSSGSSSDRGTKATSDSPTSSVVGSMAFHLARARPFGSLVLDCGLTVGNIGPPGQENHGPPKPMDLGKLPARAGNSNQSHRATLSKKL
JGI12569J13230_100128	JGI12569J13230_1001281	F014546	MTEQEELVQDIRERLGEMPMRALPFNLLAFTTTIGQRYSMTEDKIMPLVMNEAEALGVNYRIG*
JGI12569J13230_100128	JGI12569J13230_1001282	F008956	MSPKFPWTSEKDELLRSMGAAGESTAAIATLLKCIPEAVRGRARLLKIKLARSPPGLKGKGK*
JGI12569J13230_100181	JGI12569J13230_1001813	F014962	MIDWTEELLMQIEAFSRVALTYPGIDGYPVVLPLPHVFDRDKRCFILPIPHQRPVPASEEQVSLTLLHYDEQMKFERYLLLYGHLTETGNEWIFTPSHVVLPRWGR*
JGI12569J13230_100254	JGI12569J13230_1002541	F045938	APRQTLHNARKGYLRILYPYHPYYGQTFEVFGSNGGLRDLVYIRMPNNATRGIPAWMFDEAICASIRCADRPTIDCRALLRLAQLLDLQAESRSIGGHESSIPESKIASKISSSSADTGAGQVAFRRSVAKRRSK*
JGI12569J13230_101112	JGI12569J13230_1011122	F092562	MNKRKAGLVFIALITCALAGQALAQGQEIEFKSNADDLAKIRSVLEEFRQDIIRKDGYALTKLVLNPDVLF
JGI12569J13230_101372	JGI12569J13230_1013721	F039808	AAVGCHKSGRCSRAQKRGDKMRRLLLSMALLGCAISSGSCETITVEQLRVDCASASGGQAQTACAAYLMGMVHGLQIGTLFTKRRKPFCIPDSVKSPQAIQMFNKAAAERSEMGTESADLLWIMTLSSAFPCSKPR*
JGI12569J13230_101462	JGI12569J13230_1014621	F012679	DLPKANYALQVLRQARLSRNETAARMVEHLAYVTTNTGLRTPEIEETQQAARVAISELANALKEEEFAGPTLWKAALRATESWIELLI*
JGI12569J13230_101723	JGI12569J13230_1017231	F025092	LWIALLVLPFAERTLLGAKTYYFLYIGLGLTFVLYGLTIRSIFAFQHTRREPVYVWISFLVWSVFICSILAVSAIEYDLLPHTPEPSITHGRPYLIIFTMRL*