3300001063: Marine microbial communities from the Deep Atlantic Ocean - MP0556

Overview

Basic Information

• IMG/M Taxon OID: 3300001063
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054820 | Ga0000804
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0556
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31900329
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -26.91
  • Long. (^o): -21.43
  • Alt. (m): N/A
  • Depth (m): 3199.21

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057445	Metagenome / Metatranscriptome	136	N
F071317	Metagenome / Metatranscriptome	122	N
F071320	Metagenome / Metatranscriptome	122	N
F089571	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12037J13215_1000514	All Organisms → cellular organisms → Bacteria	5345
JGI12037J13215_1000909	Not Available	3216
JGI12037J13215_1002835	Not Available	1231
JGI12037J13215_1002922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella	1202

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12037J13215_1000514	JGI12037J13215_10005143	F089571	MFIIYLDKENERKMLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERIEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDLDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE*
JGI12037J13215_1000909	JGI12037J13215_10009094	F071320	VISWEATVSQGWEKIARDDKLYSMASRVPVFDADIPLRESVFFLSNPSRCFRNNPDRLYCSSDCR
JGI12037J13215_1002835	JGI12037J13215_10028351	F057445	LQKLSKAAVNEILPKAVSLILIKERLENKRKKDFLDLSDLFSVAPDV
JGI12037J13215_1002922	JGI12037J13215_10029223	F071317	MLKKITAVGLITLFAGVTAAPLIHLDECNMPCCAGLATSCCDMDQEVACPTISDCGSSIFVLIVLGPFHKSELKSSDSISQRFVTDLDIFKIETNYVTSFGNYDPGPMASLNLPLLI*