3300001060: Marine microbial communities from the Deep Atlantic Ocean - MP0103

Overview

Basic Information

• IMG/M Taxon OID: 3300001060
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0053827 | Ga0000819
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0103
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44742882
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → Caldithrix abyssi	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 21.51
  • Long. (^o): -23.45
  • Alt. (m): N/A
  • Depth (m): 4005.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029128	Metagenome	189	N
F082562	Metagenome	113	N
F089571	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI11754J13217_1000198	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → Calditrichaceae → Caldithrix → Caldithrix abyssi	8579
JGI11754J13217_1010170	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	819
JGI11754J13217_1011833	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	732
JGI11754J13217_1014337	Not Available	637

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI11754J13217_1000198	JGI11754J13217_10001983	F089571	MLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERIEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAXGEVIDISGLWDPDKGDNPTLKXQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGSIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE*
JGI11754J13217_1010170	JGI11754J13217_10101702	F082562	TLSTNLFAQTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFXFTDIPNPQTILVLYAVPRVGYRIXLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI*
JGI11754J13217_1011833	JGI11754J13217_10118331	F082562	MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKIPDRKKDVLDRIKRMK
JGI11754J13217_1014337	JGI11754J13217_10143371	F029128	MKNKIIQIVIMIIIGVGGFYGGIYYGIMKTDVYIENLMSEFEKISDDVDAFVKVSDPETIRHYVKELNKILDDIKYLGKMVESGQLADEALTXXFNSYQNKLDNLNERVVVLALETQGMLSEISGEVKSDLRTNKVELENKLKSESDSVRKEIRKLYDKTDELYKELEQVSILLDKAKETFIGKQVFK*