3300000978: Marine microbial communities from the Deep Indian Ocean - MP1140

Overview

Basic Information

• IMG/M Taxon OID: 3300000978
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054695 | Ga0000791
• Sample Name: Marine microbial communities from the Deep Indian Ocean - MP1140
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1166769
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Indian Ocean
• Coordinates
  • Lat. (^o): -29.65
  • Long. (^o): 92.99
  • Alt. (m): N/A
  • Depth (m): 2402.15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052657	Metagenome / Metatranscriptome	142	N
F063774	Metagenome / Metatranscriptome	129	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12188J13089_10024	Not Available	1574
JGI12188J13089_10147	Not Available	746

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12188J13089_10024	JGI12188J13089_100243	F063774	MLYMRCRCEHLLSASRKRLEAARVCAFAARISTFAEHHLEEVARDNSLRRGDGRWRGHHSVDPSERRTERTFGSTGPGRAKLERGGVNLDHFGEEIRFENDSVLLAMVGIIATRAESAEAA*
JGI12188J13089_10147	JGI12188J13089_101471	F052657	MNATASASLELRSALQAHGDQLDTELRLLRELPQVYLTEKCVFDRGNGRIAKKRVAICSLRCCGEQLDQKSKCNDFSGERACPTVVDAVRFLRAKVENCHGVIGRSRCISFEFFC