3300000904: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3

Overview

Basic Information

• IMG/M Taxon OID: 3300000904
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0054307 | Ga0002399
• Sample Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 16560247
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F006648	Metagenome	367	Y
F022892	Metagenome / Metatranscriptome	212	Y
F026062	Metagenome / Metatranscriptome	199	Y
F026380	Metagenome / Metatranscriptome	198	Y
F027912	Metagenome / Metatranscriptome	193	Y
F039163	Metagenome / Metatranscriptome	164	Y
F067438	Metagenome / Metatranscriptome	125	Y
F090282	Metagenome / Metatranscriptome	108	Y
F097275	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12053J12875_100036	All Organisms → cellular organisms → Eukaryota	5700
JGI12053J12875_100686	Not Available	997
JGI12053J12875_100839	Not Available	887
JGI12053J12875_101710	All Organisms → cellular organisms → Bacteria → Proteobacteria	649
JGI12053J12875_101720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	648
JGI12053J12875_101747	Not Available	645
JGI12053J12875_102061	All Organisms → cellular organisms → Bacteria	609
JGI12053J12875_102300	Not Available	586
JGI12053J12875_102681	Not Available	557
JGI12053J12875_103082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	535

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12053J12875_100036	JGI12053J12875_1000361	F022892	MKPKVNNIGVLILTEPPQAVANQEKILIAVGTAMIIVALVK*
JGI12053J12875_100686	JGI12053J12875_1006861	F006648	MSGLHACKTLVGIMKDVEESLDDVRDDLHEVRAKTEGAVEATTLGIKPSQA*
JGI12053J12875_100839	JGI12053J12875_1008391	F002654	MSKGKHPKQVFKVPKLLLSEKKDVLYLNYQEIGLEAAIF*
JGI12053J12875_101710	JGI12053J12875_1017102	F027912	MEWVLQVVDEVDDAVGALRLFAMGWSEEIGLTVAGGAATCALCAAVLRGIA*
JGI12053J12875_101720	JGI12053J12875_1017202	F026062	MQYNEHQLAQLAATVAAGMLHETDLLNRQGDKERVRAAARDVARVSLLVARHILVGAHVAAQKEDELELLYDDADFL*
JGI12053J12875_101747	JGI12053J12875_1017471	F067438	MVGAEESLRIEAGVVILLAIRNRGKPSARNATGIISITLSQNVYGKPGAFISVNRLSTAEA*
JGI12053J12875_102061	JGI12053J12875_1020612	F026380	MTDRAFAQRTIETLHAARVGGDLAGMLSVFSAEGTYEILGASADKSIAIRAKD
JGI12053J12875_102300	JGI12053J12875_1023002	F090282	MVGILQNLSPVSGAASNKMFDALAQVIRALAPEVSAVSFHDFAADTLWLSEDFLLPEDHQLVEDSLSSDTGGNLDATYGSREDGHYAMAIPVRDVNGAVN
JGI12053J12875_102681	JGI12053J12875_1026811	F039163	MXVIVTERFIGHIGSEKTPIRIVQQCGILVNSLTTEPAIWKKQYLFS*
JGI12053J12875_103082	JGI12053J12875_1030821	F097275	MIRKYGSTVLGSIGVVLWLVALYLLASAAQNSEKFVGWLPWILL