3300000728: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 11

Overview

Basic Information

• IMG/M Taxon OID: 3300000728
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0075432 | Gp0054840 | Ga0001934
• Sample Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 11
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28987603
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001823	Metagenome / Metatranscriptome	630	Y
F011571	Metagenome / Metatranscriptome	289	Y
F027066	Metagenome	196	Y
F040358	Metagenome / Metatranscriptome	162	N
F051098	Metagenome	144	Y
F091204	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12339J11913_1000262	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	6278
JGI12339J11913_1000963	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	2224
JGI12339J11913_1006220	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	692
JGI12339J11913_1006675	Not Available	667
JGI12339J11913_1008143	Not Available	603
JGI12339J11913_1009320	Not Available	562

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12339J11913_1000262	JGI12339J11913_10002624	F051098	MIIIPFYQCRNCRKSYPGNKIDIGNASLEKLVPAARYTLASQDHVFRIGGKTIQLSDLHQCNDHEIGLANFIRIKIETDEKKN*
JGI12339J11913_1000963	JGI12339J11913_10009633	F027066	MRGGDTRFQTKFTDEMFLNALSTDSIKSTAAIMKIVGCSRNTAKNALDKLAASGRVKKIEIEGNGYGWQKVGVIDNAN*
JGI12339J11913_1006220	JGI12339J11913_10062201	F011571	PYAVMIQEGGLYKLGSIDLPAGMLVARADVERMRAKYPVGSGRPLDLFLQAVRDAYHAIGYLDCSVAPRAAFNETTHVVNYSLDIAPGPQYRFASVKFDGAPEAMASRLKLAWKMAPGDAFDESYLANFAALAQKKDKAMTKWLLTVLTTYDVKADPATHEVNCIFHFAKPAQSAR*
JGI12339J11913_1006675	JGI12339J11913_10066751	F091204	MSATVIEFPGARESGSKPXHDVQSAQVSNEVVAPLTDFEIAAIENLGTIFQAGGTEAFNFAAKRQLFILASLIKRILGEDGLSELLTAAEWV*
JGI12339J11913_1008143	JGI12339J11913_10081431	F040358	MRIAIFALAVLAGGGAAEAGQIEVISASPRHIEIAAWCWTAGSNCQQEASDVAQGYCHGSDYPDYPRRALYVRSGLVERGFFSERVIFVYRCNRR
JGI12339J11913_1009320	JGI12339J11913_10093201	F001823	MRVIDRDLIRGGHYGQRSCEPXLKAEHMAAPTNSANVKISLANSEPSTHG