3300000696: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51

Overview

Basic Information

• IMG/M Taxon OID: 3300000696
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0075432 | Gp0054560 | Ga0001974
• Sample Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7492711
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008634	Metagenome / Metatranscriptome	330	Y
F010935	Metagenome / Metatranscriptome	297	Y
F026495	Metagenome / Metatranscriptome	197	Y
F078037	Metagenome	116	N
F091102	Metagenome	107	N
F091903	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12375J11883_100147	All Organisms → cellular organisms → Bacteria	1410
JGI12375J11883_100800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	728
JGI12375J11883_100868	All Organisms → cellular organisms → Bacteria	703
JGI12375J11883_101123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	645
JGI12375J11883_101232	Not Available	624
JGI12375J11883_102271	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12375J11883_100147	JGI12375J11883_1001472	F091903	MGHRDKKRHPGWLQPRWERQKRDTAARVEAAVRALQKDHAEVTYASICKRVSILFGLSISPNTIKRNELSYRIYMASRRPPRRKQLRESVLMQLINSASGPEKRSMWSKTARLRRESKDALIARLISLERRVRQQQSAENLLREEILCLAQAGSR*
JGI12375J11883_100800	JGI12375J11883_1008001	F078037	SAALAQGPSTEKLKADAQEVVKIISSDSARVQAYCETIKLGDQMDQAEQNNDSDKAEGLSNKIDELNQKLGPEYLKLGQDLQDIDPNSPDGLELGRTLAALDKLCK*
JGI12375J11883_100868	JGI12375J11883_1008681	F010935	MPEIENFQDSVQHCFELAKSSDFVEEDIALEAFELLTTNQYDGIIAHALGVSL*
JGI12375J11883_101123	JGI12375J11883_1011231	F008634	MYGKGPELEIGNATSAILISLLRKLADKDILSNTEIRSLLTEAASDLGPHEYTAPVKGAIGIILDDILPQFPEDGGD*
JGI12375J11883_101232	JGI12375J11883_1012321	F091102	NRMKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTH
JGI12375J11883_102271	JGI12375J11883_1022712	F026495	MQQLVRFVFGIAAASRNTRFQAARYGLTRAGLXPADRASFGWRL