3300000686: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49

Overview

Basic Information

• IMG/M Taxon OID: 3300000686
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0075432 | Gp0054330 | Ga0001972
• Sample Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5817519
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003313	Metagenome / Metatranscriptome	494	Y
F012657	Metagenome	278	Y
F015573	Metagenome	253	Y
F019273	Metagenome	230	Y
F034030	Metagenome / Metatranscriptome	175	Y
F074315	Metagenome	119	N
F104209	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12494J11907_100134	All Organisms → cellular organisms → Bacteria	1337
JGI12494J11907_100863	All Organisms → cellular organisms → Bacteria → Proteobacteria	611
JGI12494J11907_101039	Not Available	571
JGI12494J11907_101081	Not Available	559
JGI12494J11907_101246	Not Available	531
JGI12494J11907_101309	Not Available	522

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12494J11907_100134	JGI12494J11907_1001342	F104209	AGTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*
JGI12494J11907_100526	JGI12494J11907_1005262	F034030	AAVTSADLALAQAKNSTSMEDRLSAKIRCQDFQKNSDGKWTSSSKAKIGKIDFSNHTFGVDEVDIGGADLATFLNRKCVAH*
JGI12494J11907_100863	JGI12494J11907_1008632	F074315	METTDFTEQWSNMQKMFLASSEMSASFRESARRFWENQGKLLDDMQALANGWFDRRRT
JGI12494J11907_101039	JGI12494J11907_1010391	F015573	QDELHNPAVYLERIAREIKIIREMMSKVVNYMVDAESEIPEKMRRFIMYMHDVHDVLNMYQEIGQEPPQHVKREAERCDDRYRQILYEMHTDGGAFEKVRRNMASDPENRWDHTRFLPKRKESDNEAGKSNEGRSGS*
JGI12494J11907_101081	JGI12494J11907_1010811	F012657	RDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRSWFAGIGHNELNPARLERFSEFWSREY
JGI12494J11907_101246	JGI12494J11907_1012462	F019273	IYRVRTNKKYPFKQMQPGETFKLNDEDVRSAQKMAWYYRTRCKRPIRIIIAKSDDGFHCHRID*
JGI12494J11907_101309	JGI12494J11907_1013091	F003313	LANWFRIYAWFLLLVTALPAIARLARPRELAQIMLLRYENPTRRKRARIGGAVYLALAMLATPFLLRSPEHQKRWLTMALLVGAVSAVEFLMNSRSFGIDDLTRQNRYFGGVY