3300000669: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24

Overview

Basic Information

• IMG/M Taxon OID: 3300000669
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0075432 | Gp0054743 | Ga0001947
• Sample Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 4044798
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005929	Metagenome / Metatranscriptome	386	Y
F091903	Metagenome	107	N
F104209	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12293J11934_100194	All Organisms → cellular organisms → Bacteria	1115
JGI12293J11934_100558	All Organisms → cellular organisms → Bacteria → Proteobacteria	669
JGI12293J11934_101100	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12293J11934_100194	JGI12293J11934_1001942	F104209	RRQERRNGHGGAGTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*
JGI12293J11934_100558	JGI12293J11934_1005581	F091903	MGHRDKKRHPGWLQPRWERQKRDTAARVEAAVRALQKDHAEVTYASICKRVSILFGLSISPNTIKRNELSYRIYMASRRPPRRKQLRESVLMQLINSASGPEKRSMWSKTAR
JGI12293J11934_101100	JGI12293J11934_1011002	F005929	MRENXSLLSFWGLVFSLIAVTLFVVIYSYQKSKYANRRIVEDLRQRSVDVYLAAKTPEAESDSKMFRAASNEIERLRAETRVLFWLIIAMNTAVIIIFILAYRYF*