3300000545: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled

Overview

Basic Information

• IMG/M Taxon OID: 3300000545
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046224 | Gp0054947 | Ga0011511
• Sample Name: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Lifesequencing S.L.
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 84476983
• Sequencing Scaffolds: 22
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece	1
Not Available	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Mycoplasmatales → Mycoplasmataceae → unclassified Mycoplasmataceae → Mycoplasmataceae bacterium RV_VA103A	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: Sierra Nevada National Park, Granada, Spain
• Coordinates
  • Lat. (^o): 36.965667
  • Long. (^o): -3.429194
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000708	Metagenome / Metatranscriptome	926	Y
F003605	Metagenome / Metatranscriptome	477	Y
F006124	Metagenome / Metatranscriptome	381	Y
F008380	Metagenome / Metatranscriptome	334	Y
F012266	Metagenome / Metatranscriptome	282	Y
F019462	Metagenome / Metatranscriptome	229	Y
F021060	Metagenome	220	Y
F021064	Metagenome / Metatranscriptome	220	Y
F026690	Metagenome	197	Y
F029548	Metagenome	188	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
CNXas_1000033	All Organisms → cellular organisms → Bacteria	29027
CNXas_1000043	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	25753
CNXas_1000069	All Organisms → cellular organisms → Bacteria	19215
CNXas_1000251	All Organisms → cellular organisms → Bacteria	6226
CNXas_1000392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece	3299
CNXas_1000883	Not Available	1961
CNXas_1001913	All Organisms → cellular organisms → Bacteria	1420
CNXas_1002227	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1338
CNXas_1002445	All Organisms → Viruses → Predicted Viral	1286
CNXas_1005248	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	917

Sequences

Scaffold ID	Protein ID	Family	Sequence
CNXas_1000033	CNXas_100003318	F026690	MPADDRISRLLELLEGDLHQEKLESLSRAFEALAQDRAETLVFFVLQNVCQRLASALEAEAVSVERFSELTSAIAAQISYILQHLHEGATAVDQLENLVATLFRNLGLYRR*
CNXas_1000043	CNXas_100004328	F066625	MNRTLIAALAASILLLGTLRAQDAKFATDNLKYSRDFYSKVHFIAIAKSPKAFKYDRYPSGGPERIQCDEGTYWRQHGKAWLHVNDRGRSGEPIDHAERDRFVMTYALREGWGRTGEPVDKETSRKLDGWIKLIDSALTTAPITVKLTDKSEVDRAQWVFEAPPENSNGVPTRFTFRKPMGDKNENVLLHEFSGSIRLEGDKVVPAGAADMVKLGFGYMMNGDGGYEVSEFVWEEMQAAEADGSKRKSAQSPSPSRSR*
CNXas_1000069	CNXas_10000696	F037855	MEPTPKEASPKEKFDTLFGLLKDHYAGLLDFEFKHATVLTLLLGWGLASNEARSFFQANRAIAWGGGVGLTIYVVLYSMWVWNFYRRSRLAYSQLAELRYMPTEYFEMRRIQLFSVVTFILLHWVVVAVICAVLLFAEAKITHG*
CNXas_1000251	CNXas_10002512	F008380	MSHEKQTAPSPIRMKVSTLPGLPVGARELGVVYASVEGVNDHSFDECLVELTRKAESLGATALIGMQLVQSQFQWNQRTSLLATAIRTG*
CNXas_1000392	CNXas_10003921	F037848	MEKLASMLRTGPVLVGEFRGGKSEIAKRFDKTDKNAPPIEFGMFKLTLELLADGSPVMVSVFLDRGVNAEQFAATITLKRGDIVAIAVSKLEMIKGVRRASCGATNFVVLDKAEIDQLRG
CNXas_1000883	CNXas_10008832	F071942	MTKIVTKDFRTPDLYFAAYLFTAGVEMKTPNRENGRVYFVFDTSICNIDELKTAWFNNTGKIPAQQYANAIKNLKSVCHMG*
CNXas_1001913	CNXas_10019132	F000708	MTKPDPALAEIAAQFTRHDVEWSRGAYVIIDRRTANPIARLRPIPDTDRFELFYWSNAKGRWTTFGNLGRMKLMLESAHEIVENDPMFRIPRAS*
CNXas_1002227	CNXas_10022272	F003605	MAVGDQATAAGYSLVPDTGEEGRVRWGAREINRTRDYVAAVKALVPTGKAGFRTAAGISSGTADPTGGADGDIYFKVIS*
CNXas_1002445	CNXas_10024452	F006124	MNWQQTVTDPDEIKVFMALDGPEYTWRTISGIARQTGLSEDRVAQILAKYNLKLTRLSETPSVSGSALVGLIEKVGT*
CNXas_1005248	CNXas_10052482	F036309	MKRFLIFTLIGILLLTGSALRAQTKPAKSNVRYDTIIVKHVDKPKPVKKPPVAKPEQKPEIVIPTPELINQPYYYDNDNNRLIKLESAAAQMITKKKTLGLKGAKQSLSMDAASSKIRFVTKKDIVFIIKTSGDVIDLTSYIKLYNFLPDGTKREVTVNAKEGLLNNKDEAKGKLMGFGVKMINKDNYMIQLPEQLEAGEYGFVWVKNMELKEFTVFAFGIDWKSSD*
CNXas_1009117	CNXas_10091172	F012266	ALALQLSFFEVSALSFRLVGSAPERPCDDVCGFNALLSESDGDAADFLD*
CNXas_1009133	CNXas_10091331	F050386	LRGSRKSYQWKRISEVHKLMVDIQTAHAKLGSRDGNSREHEIKVPNDY*
CNXas_1010951	CNXas_10109511	F044395	SPYHNDLHEFTYLVAMQDFCDKTLLEMRTNGEVDKKRSKELKRESSNAKAKLNSSKYKGLKIESGQYEEFLKQINERFRN*
CNXas_1011493	CNXas_10114931	F092274	GDLLFARTWKSGEFVANFGYKQTGNPERGLRIQMVDSSQTDPGKFLIGDPVSIPLDLSNELRFSAGYSVPIFHWYKSYWWLIAEFNHTHFVGSHTSTERIIHPAEVSAGIQSNFPWYRNVSVGVMWQLLLNNGGKGLDRSTAFKTADGRGDINFGELMNDPQLTSDVETFLQSRGATFSEASSKVFSTNNPAFDAWRNITVAPAKIQS
CNXas_1011730	CNXas_10117301	F085500	GYSFLKVEISQHYKEKHADITDELILELLKLFVDKKDFQPDKLTTDYFVLEKILHLGKKYKLV*
CNXas_1013248	CNXas_10132482	F021060	MWDAKRQFIWLAAGIALGTFVAYSDSKTEDGVFVPRFFIFMETLVLGIIALLFYFYSRKKQ*
CNXas_1013857	CNXas_10138572	F079859	VKRGLITWDMLEIPPEVFEQRLAGIRRIMASNDVPAAVVYSELWRSNPARYFSNYMPYFNRALLIIPANQPVTLLCGLSPRVYGWIRSVTTIEDV
CNXas_1014026	CNXas_10140262	F092928	RRDDAGNALRSSAEHDAFKKMVLAQGVGHADRQAPRDEKGDRGARAPAGRDHAPHLG*
CNXas_1014284	CNXas_10142842	F089086	MTSKVRLRQRMQVVLHMVMAFVVAILMAQLWLFTVTLEAMESHTASLSIVSAALACSVLGCAAVWALIRFFLRAEAQQQSQNG*
CNXas_1016732	CNXas_10167322	F019462	AGDVDVDVKIESMEANDRITLVGQVLSTTAKFFDNTPVKLESHGIVRYRTMTNLVGEFSFDEVPKDTYHLSVDLPEGQITLFCVHRGNS*
CNXas_1018208	CNXas_10182082	F029548	LKDDTEHDDLMPQRQSLFPVTADDIVDNALQSLDEHEAREVTRKAADEVVRIAVEKRKAEYRTQRAQEEMSNLIDNANLLDQKVGDYKINSTFETATGTTSVEIKKSKTNFLLIVAAIGI
CNXas_1019304	CNXas_10193042	F071261	ITERPTDGQRRPLQDFETLYIGVATPAVRRAFVGYHRAESRLCAIAKEV*
CNXas_1019575	CNXas_10195752	F021064	TTKTQKAYLLKGLNCKPFDLPKSVIGNNIMANIALNIAITPNNLLGIDLNIA*