3300000530: Acid mine drainage (AMD) microbial communities from Fan Kou Mine, Shaoguan city, Guangdong Province, China - PRO_U

Overview

Basic Information

• IMG/M Taxon OID: 3300000530
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0083745 | Gp0054997 | Ga0011597
• Sample Name: Acid mine drainage (AMD) microbial communities from Fan Kou Mine, Shaoguan city, Guangdong Province, China - PRO_U
• Sequencing Status: Permanent Draft
• Sequencing Center: Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5290185
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp.	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Acid Mine Drainage (Amd) Microbial Communities From Fan Kou Mine, Shaoguan City, Guangdong Province, China
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Acid Mine Drainage → Acid Mine Drainage (Amd) Microbial Communities From Fan Kou Mine, Shaoguan City, Guangdong Province, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → acid mine drainage → acidic water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Fankou, Shaoguan City, China
• Coordinates
  • Lat. (^o): 24.814784
  • Long. (^o): 113.602638
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034504	Metagenome	174	Y
F036523	Metagenome	169	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
PROU1_101407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp.	1644
PROU1_101631	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	30504
PROU1_102213	All Organisms → cellular organisms → Bacteria → Proteobacteria	6974

Sequences

Scaffold ID	Protein ID	Family	Sequence
PROU1_101407	PROU1_1014073	F036523	MAYNYGSPITGTLTTTTAVVQFPNEPMPASIVLNSASGSRAIQFSFDNGTTFYPAVTPTYSETGQIVYVLNFPVTTIQFTGAVNDTYAIIS*
PROU1_101631	PROU1_10163117	F034504	MKIDFYLKWTATAITILGAVFTSVNMYPMGPALLNLGALGWLIVAIRWREWSLITINGTLLLIYTVGLISKLI*
PROU1_102213	PROU1_1022134	F036523	MAYNYGSPITGTLTATTAVVTFPNEPMPASIVLNSSAAGRAIQFSFDNGITFYPAVTPTYTETGQIVYVLNFPVTTIQFTGAVNDTYAIIS*