3300000493: Lentic microbial communities from White Lake grasslands, BC, Canada

Overview

Basic Information

• IMG/M Taxon OID: 3300000493
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0074126 | Gp0054485 | Ga0011522
• Sample Name: Lentic microbial communities from White Lake grasslands, BC, Canada
• Sequencing Status: Permanent Draft
• Sequencing Center: Pennsylvania State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15666388
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis → Candidatus Nitrososphaera evergladensis SR1	1
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Lentic Microbial Communities From White Lake Grasslands, Bc, Canada
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Microbial Communities From White Lake Grasslands, Bc, Canada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: White Lake grasslands, BC, Canada
• Coordinates
  • Lat. (^o): 49.2833
  • Long. (^o): -119.5833
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014681	Metagenome / Metatranscriptome	261	Y
F025994	Metagenome / Metatranscriptome	199	Y
F077227	Metagenome	117	Y
F081499	Metagenome / Metatranscriptome	114	Y
F081868	Metagenome	114	Y
F091572	Metagenome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MLSed_100713	All Organisms → cellular organisms → Bacteria	2992
MLSed_101071	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis → Candidatus Nitrososphaera evergladensis SR1	4294
MLSed_101544	Not Available	2067
MLSed_104846	Not Available	741
MLSed_104931	Not Available	729
MLSed_106020	Not Available	620

Sequences

Scaffold ID	Protein ID	Family	Sequence
MLSed_100713	MLSed_1007135	F077227	METITQVRQQLDNLLARIETDQQALAAEQAAVARATEALHETPALQAAIAQGQQIMRGRVLMLIDHQLGLIRESLTAVLLRALRRQVGELEL*
MLSed_101071	MLSed_10107113	F014681	MRSFLKDIRGVVDLGLVLMIGIAFAGLAVIAYIIYTLVDMLDATGSAAQTMGNITSGFDNAIALILVAITIFILSIAISALLMLRGR*
MLSed_101544	MLSed_1015445	F081868	MESKNKQKQPVVNANSHGVSVAIWNNTNTQGKEYQSLSMNASSKQTDGSYKNRTIFFPSDLENLINALTELK*
MLSed_104846	MLSed_1048461	F091572	MLPSDRYLADILGLTEEQYRHFQIEVRKRAAEGPQPAVVAGTETLIAAGISLLIGVGTTIISSLLKPTLPQPGQAPGQPRQTQDITDPIIRNSRFAPRYGFDSQQDIATLGSIIPIVYANRELISGDYYGGIRINMPMLWNQILSLGGGQMLRGVFLLGEGTVSSIDTTGFAIGSNTLQGYVFDNTSATEQGSRVTVYFSPDGGRIAGTDRVLGRTNANDDGSSSSSDVFQVYWDGDEQQDFCSSNR
MLSed_104931	MLSed_1049312	F025994	MTDEDITKLVNDAIRHHELRVALWSGLLGAALMTGTWHAIWLCRNLTLSLR*
MLSed_106020	MLSed_1060201	F081499	VKAFSLENAYAVEKAQVVRNTEGSNESVVIGEMVDT