3300000478: Deep mine microbial communities from Beatrix mine, South Africa, that are thermophilic, sample 2

Overview

Basic Information

• IMG/M Taxon OID: 3300000478
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0070940 | Gp0054547 | Ga0011558
• Sample Name: Deep mine microbial communities from Beatrix mine, South Africa, that are thermophilic, sample 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Inqaba Biotechnologies
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1876407
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Mine Microbial Communities From Beatrix Mine, South Africa, That Are Thermophilic
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Mine → Deep Mine → Deep Mine Microbial Communities From Beatrix Mine, South Africa, That Are Thermophilic

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → mine → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Beatrix mine, Free State, South Africa
• Coordinates
  • Lat. (^o): -28.3
  • Long. (^o): 26.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015419	Metagenome / Metatranscriptome	255	Y
F042051	Metagenome / Metatranscriptome	159	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
BPH_10975	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	759
BPH_13047	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1767

Sequences

Scaffold ID	Protein ID	Family	Sequence
BPH_10975	BPH_109751	F042051	MTTFGEVNWNDDVFGGNEGKKNTNGKDLFLRLKEGSNEMRLVTQPFQYLVHKYKKEGDSGFGQKVHCSAIHGSCPLCETGDKAKPRWLLGVISRESGTYKILDISFAVFSQIRKLAKNTQRWGDPTKYDIDIVVDKNGGATGYYSVQPISKEPLSAADQKIKDNVDLDDLKRRVTPPTADLVQKRIDKINGVGDANAAAPAKGKPATKAPAKAAAPAVSMTDDEEMDESFPAY
BPH_13047	BPH_130473	F015419	MEYKVQITDEAGNIRQYNVSRSSSSEDKSLNDFILEALQISEDKRKLPLKIQCPNGLEVYPSIKMKFENYGSPLLGDKLEAMHITWRDGL*