3300000433: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3

Overview

Basic Information

• IMG/M Taxon OID: 3300000433
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0054792 | Ga0011547
• Sample Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2026191
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028660	Metagenome / Metatranscriptome	191	Y
F031228	Metagenome / Metatranscriptome	183	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MB_CA_Ref_M3DRAFT_10302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	695
MB_CA_Ref_M3DRAFT_10476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
MB_CA_Ref_M3DRAFT_10302	MB_CA_Ref_M3DRAFT_103022	F028660	MGIAEESLDAEGFVKPVMLGELISVIEADGFAYRLWKFTELTSDGPGGEDSFSIDRVPNHAEAGLSFVENQQPLATSGEQHEVGFPMARRPAAFDLGGAFGDRAPLFDEAGGAASWVSSAPSSSFVARQQAMPVILLGRTMIDETID*
MB_CA_Ref_M3DRAFT_10476	MB_CA_Ref_M3DRAFT_104762	F031228	MDHREIAVRVPVMNEVQFLFASEPCKPLKPRSLYVVFLVEKDVRVERRRTCNYLNHEEINGQYEVCTSSYQKHRNEEEGCIVAFVTAVRP*