3300000427: Marine microbial community from Union City, CA, USA - Pond 1C Liquid 2

Overview

Basic Information

• IMG/M Taxon OID: 3300000427
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053056 | Gp0054242 | Ga0026741
• Sample Name: Marine microbial community from Union City, CA, USA - Pond 1C Liquid 2
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 65780205
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	5
Not Available	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Salt Pond → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline evaporation pond → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Eden Landing Ponds, San Francisco, CA, USA
• Coordinates
  • Lat. (^o): 37.5693
  • Long. (^o): -122.102517
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009989	Metagenome	310	Y
F030884	Metagenome / Metatranscriptome	184	Y
F036014	Metagenome / Metatranscriptome	171	Y
F038111	Metagenome	166	N
F097996	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
P_1C_Liq_2_UnCtyDRAFT_1000687	All Organisms → Viruses → Predicted Viral	4386
P_1C_Liq_2_UnCtyDRAFT_1001069	All Organisms → Viruses → Predicted Viral	3491
P_1C_Liq_2_UnCtyDRAFT_1001252	All Organisms → Viruses → Predicted Viral	3177
P_1C_Liq_2_UnCtyDRAFT_1001708	All Organisms → Viruses → Predicted Viral	2628
P_1C_Liq_2_UnCtyDRAFT_1004799	All Organisms → Viruses → Predicted Viral	1385
P_1C_Liq_2_UnCtyDRAFT_1023797	Not Available	541
P_1C_Liq_2_UnCtyDRAFT_1025566	All Organisms → cellular organisms → Bacteria	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
P_1C_Liq_2_UnCtyDRAFT_1000687	P_1C_Liq_2_UnCtyDRAFT_10006871	F038111	SKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNSPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ*
P_1C_Liq_2_UnCtyDRAFT_1001069	P_1C_Liq_2_UnCtyDRAFT_10010695	F030884	MKVLKATQEQHSELDGYRNGNSVLQFVKDGNDNWIVGKSVLTDSNFSAIHDKLSELQVIDYVKPKEPDI*
P_1C_Liq_2_UnCtyDRAFT_1001252	P_1C_Liq_2_UnCtyDRAFT_10012522	F097996	MAINREGMHPRYLGFQVDWPVFIKIPFTADGKQWKKSEHFNWAERNIDTKDAASLYAQGFIYHNTELNKANKVGDRLSEMNAEDLRSVVTQLNAIVKDRTSSNQEFNNKKCKQSKIEDKQRGLIRRFLNHNPWIAEQFYEIRDTILGE*
P_1C_Liq_2_UnCtyDRAFT_1001708	P_1C_Liq_2_UnCtyDRAFT_10017081	F036014	MAVFQSRDTRTFEAGGDLSAGQFKFVALAADGQVDLAG
P_1C_Liq_2_UnCtyDRAFT_1004799	P_1C_Liq_2_UnCtyDRAFT_10047991	F038111	KVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNSPLYVLTHKDNKKLKKFMSIYGLVLDHTPLCDDGIEREVYRLDRRQ*
P_1C_Liq_2_UnCtyDRAFT_1023797	P_1C_Liq_2_UnCtyDRAFT_10237971	F009989	MSSVSDHVQMMKSQETKYDSVFNKREWLSINDTTTQYDQGTXXXETTALSNNSKFLDYNSGYLSVPLLVTLTSNASEITGIADTGVLPYTKSVGFKQSFLSMINSITVDLNGQPMVQQNQLIDMYNHFRLLTSESWTSQNRWSTIGFYPDVAD
P_1C_Liq_2_UnCtyDRAFT_1025566	P_1C_Liq_2_UnCtyDRAFT_10255662	F038111	MIPSKVAVANKPEYTIWLENYKNIATFIHADVYKYNKTIRQEFGKDLDLLADLHNSPLYVLTHKDNKKLKKFMSIYGLVLDHKPLCDDGIEREVYRLDRRA*