3300000366: Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 3KL_010_SOIL

Overview

Basic Information

• IMG/M Taxon OID: 3300000366
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063439 | Gp0054160 | Ga0026664
• Sample Name: Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 3KL_010_SOIL
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 413268194
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Russia: Kulunda Steppe
• Coordinates
  • Lat. (^o): 52.98
  • Long. (^o): 82.1
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F003605	Metagenome / Metatranscriptome	477	Y
F005102	Metagenome / Metatranscriptome	412	Y
F087396	Metagenome / Metatranscriptome	110	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SS_3KL_010_SOILDRAFT_10030741	All Organisms → cellular organisms → Bacteria	1859
SS_3KL_010_SOILDRAFT_10034952	Not Available	1662
SS_3KL_010_SOILDRAFT_10114207	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	628
SS_3KL_010_SOILDRAFT_10157725	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
SS_3KL_010_SOILDRAFT_10030741	SS_3KL_010_SOILDRAFT_100307413	F087396	PADRPACTWHADRPAVLLWEGLQMDEATLRNSPILPYVLMLASLLQRRTIGREELVAALRRSMRQRSIGRWPHREYVLRYLHEHPP*
SS_3KL_010_SOILDRAFT_10034952	SS_3KL_010_SOILDRAFT_100349524	F005102	MAVQDRGRYYAQEVTVDQDANVREQIQNALDEGDQHNWHLVGVSDVMAGRTVMLFWDTERPSFGITHKSK*
SS_3KL_010_SOILDRAFT_10114207	SS_3KL_010_SOILDRAFT_101142072	F003605	MAVGDDAQSAGIPLVPEVGEEGRTRWGALEINRTRDFIAQVKALLPIGKSGYRAASGITIGTEPPSGGSDGDLYFRYVEQEPTMEPM*
SS_3KL_010_SOILDRAFT_10157725	SS_3KL_010_SOILDRAFT_101577252	F000388	MKVIKVTKDYFETEDEKVYFFEPLEKEISVEDIQKIVNANKKLVKELKGAKD*