3300000365: Alkaline sediment microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 9KL_010_SED

Overview

Basic Information

• IMG/M Taxon OID: 3300000365
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063439 | Gp0054157 | Ga0026663
• Sample Name: Alkaline sediment microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 9KL_010_SED
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 642499223
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Russia: Kulunda Steppe, Lake Tanatar
• Coordinates
  • Lat. (^o): 51.39
  • Long. (^o): 79.48
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F046098	Metagenome / Metatranscriptome	152	Y
F055545	Metagenome	138	Y
F061006	Metagenome / Metatranscriptome	132	Y
F071990	Metagenome / Metatranscriptome	121	Y
F076272	Metagenome / Metatranscriptome	118	Y
F098192	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SL_9KL_010_SEDDRAFT_10000007	Not Available	112692
SL_9KL_010_SEDDRAFT_10001217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	18559
SL_9KL_010_SEDDRAFT_10007152	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7216
SL_9KL_010_SEDDRAFT_10010897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5546
SL_9KL_010_SEDDRAFT_10016255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	4257
SL_9KL_010_SEDDRAFT_10029070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2810
SL_9KL_010_SEDDRAFT_10030513	Not Available	2710
SL_9KL_010_SEDDRAFT_10051460	All Organisms → cellular organisms → Bacteria	1844
SL_9KL_010_SEDDRAFT_10078275	All Organisms → cellular organisms → Bacteria	1283
SL_9KL_010_SEDDRAFT_10100104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	1036
SL_9KL_010_SEDDRAFT_10110204	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	954
SL_9KL_010_SEDDRAFT_10149380	Not Available	744
SL_9KL_010_SEDDRAFT_10197808	Not Available	604

Sequences

Scaffold ID	Protein ID	Family	Sequence
SL_9KL_010_SEDDRAFT_10000007	SL_9KL_010_SEDDRAFT_1000000735	F001506	MNRILYEIRCKCNEDISVTKKRKSTNRSEGKPFLYPNPGELTSKTFQIKYEKSLSSVAKFLLNSFQNKYLYYAIDDILYLLNSNPRERDNLLALLYSPVLSLQNNLSINFFDIWIQEVYIQDVPKTNKFLTTNVSNFESFQYITIKLLYRTKIPVKKHESLW*
SL_9KL_010_SEDDRAFT_10001217	SL_9KL_010_SEDDRAFT_100012171	F055545	ARRVAVGHQSFKLSTVGRAKIKADVRASHALGMTHPDTIGNLVSGGEH*
SL_9KL_010_SEDDRAFT_10007152	SL_9KL_010_SEDDRAFT_1000715210	F071990	MAEPTTRFRVIPNDTSADDLNTEAKRLGSISGQTVVSTGEGNEADFGLVDISEGAANSGVLTLLWDVTADGGNTTVETFKFWLAACGFVEADSAIKFRALSGTDNATPSSTENYTANATTESYTFADLDESEPASANLFPTDEGASMVLSTTSDDALMWAMYAAIASGETTGTYKGLDSGYELRFNLKYSYS*
SL_9KL_010_SEDDRAFT_10010897	SL_9KL_010_SEDDRAFT_100108975	F076272	MMKFEQGIWLKCSDPDALVQLLAAWDLDQAATHVMGYIGTRLLADRDKPGSYLILAEFAEADGDLTAAEEAERNNQREETDQWAQKLRALADGELTWTHYDELYRTGVTGDLRTG*
SL_9KL_010_SEDDRAFT_10016255	SL_9KL_010_SEDDRAFT_100162552	F098192	MKCPLRIDSQGNASDCYKNECAWWVADAEIEGSVTQGACAVLEVAVNGVFVTIGDDE*
SL_9KL_010_SEDDRAFT_10029070	SL_9KL_010_SEDDRAFT_100290706	F098192	MKCPLRIDSQGNALECYKDECAWWVADAEIEGSKTTGACAVLEVAVNGIFVTVGDDEEEA
SL_9KL_010_SEDDRAFT_10030513	SL_9KL_010_SEDDRAFT_100305134	F098192	MKCPLRIDSQGNASDCYRDECAWWVIDAEIEGSKTNGACAVLEIAANGIFVTIGDDDEEEY*
SL_9KL_010_SEDDRAFT_10051460	SL_9KL_010_SEDDRAFT_100514601	F098192	MMKCPLRIDSQGNASDCYREECAWWVNDAEIEASHATGACAVLEIAVNGVLVTIGDYDE*
SL_9KL_010_SEDDRAFT_10078275	SL_9KL_010_SEDDRAFT_100782752	F098192	MKCPLRIDSQGNASDCYKDECAWWVIDVEIEGSKTKGACAVLEVAANGIFVTIGDDEEEDYG*
SL_9KL_010_SEDDRAFT_10100104	SL_9KL_010_SEDDRAFT_101001041	F055545	QLARRIAVGHQSFKLSTVGGAKIKADVGASHALSMTHPDTIGNLVSGGEH*
SL_9KL_010_SEDDRAFT_10110204	SL_9KL_010_SEDDRAFT_101102042	F001506	MNRILYENRCKCNEEFSLTKKRKSNTRSEGKPLQYPKPSEIISKTFQIKYHEKLSPTATFILNSFQNKYIYYAIDDILYSFKSNPIERDNLLAVLYSPIISLQNNFSVNFFDIWIRDIYIDEVSKPNKFLKQNSENFEKVNYITIKLFYKTKVPVKKQESLW*
SL_9KL_010_SEDDRAFT_10149380	SL_9KL_010_SEDDRAFT_101493802	F046098	MKIILTIAAVILLIVGILSLLPSFNWANVPTWRAILEIVVGGLILLGRYRRF*
SL_9KL_010_SEDDRAFT_10197808	SL_9KL_010_SEDDRAFT_101978081	F061006	HDSPSTEPFKRIDQLLPKKPGQSPKERANDIDNTLTWLRNRGVEQPELNNDEPFKKAGQMPLPDSRTPEQKAKDVDAITNWVRNPPSQDTPSTEPFRKIDQLLPKKDRQTPEDRAKDIDNALTWVRNRGVDHATLEPSPVFEKLNSIPIDKRTPEQKAKEVDGILNWMRNPKDHDSPSTEPFKRIDQLLPKKPGQSPKERA