3300000337: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - metatranscriptome cDNA-P3

Overview

Basic Information

• IMG/M Taxon OID: 3300000337
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063124 | Gp0053524 | Ga0026151
• Sample Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - metatranscriptome cDNA-P3
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 306555
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → solid layer → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3
  • Alt. (m): N/A
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005001	Metagenome / Metatranscriptome	415	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
permaP3DRAFT_10026	Not Available	596

Sequences

Scaffold ID	Protein ID	Family	Sequence
permaP3DRAFT_10026	permaP3DRAFT_100261	F005001	NCNTTHYRGQVT*FPAWLSTGMHGMEHREQERRTFRLSAPRWPFSPASGSMLPGSPLAASCPEPVARNGFLLAHNGCRLSATSIPGSKLPACYFASFQVXFRARSALRLHCRVPVCAGCGGFTASGPLHFHHSVRPAAPAISTPLRDSYIPRDQSVQPPLLPAGPPGVSARFPLAPRRPS