3300000334: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B4 Metatranscriptome

Overview

Basic Information

• IMG/M Taxon OID: 3300000334
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063124 | Gp0053547 | Ga0026493
• Sample Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Thermokarst Bog cDNA B4 Metatranscriptome
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11200640
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → thermokarst → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3
  • Alt. (m): N/A
  • Depth (m): .3 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000734	Metagenome / Metatranscriptome	915	Y
F004925	Metagenome / Metatranscriptome	418	Y
F007695	Metagenome / Metatranscriptome	346	Y
F010404	Metagenome / Metatranscriptome	304	Y
F027406	Metagenome / Metatranscriptome	194	Y
F051759	Metagenome / Metatranscriptome	143	Y
F063716	Metagenome / Metatranscriptome	129	Y
F105212	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
thermBogB4DRAFT_100089	Not Available	1244
thermBogB4DRAFT_100140	Not Available	781
thermBogB4DRAFT_100156	Not Available	704
thermBogB4DRAFT_100219	Not Available	537
thermBogB4DRAFT_100226	Not Available	581
thermBogB4DRAFT_101024	Not Available	596
thermBogB4DRAFT_101473	Not Available	590
thermBogB4DRAFT_107378	Not Available	551

Sequences

Scaffold ID	Protein ID	Family	Sequence
thermBogB4DRAFT_100089	thermBogB4DRAFT_1000891	F063716	VKRRDPWHGANAPAKPVADLVLMVEMRQKITGVS*
thermBogB4DRAFT_100140	thermBogB4DRAFT_1001402	F007695	VSEKQPESEEADPWHRVNALPKAAADPVLNGQEAKENRRRVLTWFASWWRNHQXKRAEKPHSKSXGRKALDGPATRPKTPLAVENGVGKPAAPVRVRA*
thermBogB4DRAFT_100156	thermBogB4DRAFT_1001561	F105212	KNGGSGQKILIDLEDKSNGSQDLHHGXVGVQDHKEQSDVIRATKKC*
thermBogB4DRAFT_100219	thermBogB4DRAFT_1002191	F051759	VGEGKAVTSDRPRAGEKKGCDAPGSIDPVAGENGHWGAERRSVQRSRLRCSVPGMPVXGKAANRITWNLX
thermBogB4DRAFT_100226	thermBogB4DRAFT_1002261	F027406	GSK*PDFQPSPLPTCTALNIATESAGRFASWLPDRRFPNGWIDALKHAAALFHLGPVARNGLSLARNGXRFHEXHSGVKGPGLLLRSLAYRFLRPFSLDLRYRTRFAPVPAASSIHTRCAACDPRA*LRLPLPLPFRILRSLRIKAFRGICXPXTRLPIRPXSVRSPQPFLFLXSAMDHRSRSATFRRLAVPI
thermBogB4DRAFT_101024	thermBogB4DRAFT_1010241	F000734	MARPVKTFREVGDIKNDTADLWTKGDLRVKRRDPWHRANVLPKAMADPALSG*
thermBogB4DRAFT_101473	thermBogB4DRAFT_1014731	F004925	SRIIPGDWGKVESGWLAWPLSSPDRKVRGSGGRIHQFLWRRSRAVSNAKEELGGEER*
thermBogB4DRAFT_107378	thermBogB4DRAFT_1073781	F010404	LQQISAAGSTLLAYIFDAALEFQLARSASRSRPRLAFFRLTGLDHCESPVANFLS*