3300000331: Human fecal microbial communities from Cork, Ireland - EM203

Overview

Basic Information

• IMG/M Taxon OID: 3300000331
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0054123 | Ga0010854
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM203
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 116227644
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:269	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F047755	Metagenome	149	Y
F076064	Metagenome	118	N
F082887	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
EM203_1005876	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	7176
EM203_1065330	All Organisms → cellular organisms → Bacteria	6903
EM203_1071228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:269	11740
EM203_1079701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9039

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM203_1005876	EM203_10058763	F076064	LKKTTPGRALENLFYLQYDLPPEVSFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTKDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY*
EM203_1065330	EM203_10653307	F039198	MKLTIAEIQGTKYVQIYLTEDELQKNETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC*
EM203_1071228	EM203_10712282	F082887	MEKVKTIAKYLTNILAIVSALVAGINAVDGITIPYAVQIVQVIAVVQGVLGTYLLGQKAISKKEE*
EM203_1079701	EM203_10797015	F047755	MEQEKVKYLIDMINNMDIKDKLRLAICMSQSKWSGRIYNTKEYYEKFDSMLKDIDEEYRTTFINFGKYKLVMFAMAKLMEMETTEKNKVALYLFNNIKIQ*