3300000330: Human fecal microbial communities from Cork, Ireland - EM175

Overview

Basic Information

• IMG/M Taxon OID: 3300000330
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0054119 | Ga0011157
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM175
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57740212
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F062845	Metagenome	130	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM175_1000252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	21608
EM175_1002395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3579
EM175_1002863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8966

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM175_1000252	EM175_10002529	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPPRSCA*
EM175_1002395	EM175_10023954	F092227	MNEQKRKRILRVGCLILAGVFLLSVLGSVILMFLV*
EM175_1002863	EM175_10028633	F047125	MDVALLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRGRWS*