3300000329: Human fecal microbial communities from Cork, Ireland - EM172

Overview

Basic Information

• IMG/M Taxon OID: 3300000329
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0054118 | Ga0011184
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM172
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 124001699
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:321	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F039198	Metagenome	164	Y
F068811	Metagenome	124	N
F068941	Metagenome	124	N
F089005	Metagenome	109	N
F092227	Metagenome	107	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM172_1008114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	10993
EM172_1009757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → environmental samples → Firmicutes bacterium CAG:321	3021
EM172_1012512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	642
EM172_1029212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	828
EM172_1081204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Intestinimonas → Intestinimonas butyriciproducens	3340
EM172_1098505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1294
EM172_1111589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3828

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM172_1008114	EM172_10081148	F039198	MKITSCEVINTKYTQIYLTEEELQKQETKEIIKKYKKEKHRVAIFVTGKENYPEILKKIITKQVE*
EM172_1009757	EM172_10097573	F068941	MNNKKFIIGVVLLLLLMVGGTYAYYKWSSSDNVNVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKENSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN*
EM172_1012512	EM172_10125121	F089005	KCLTKSKQRSIIAHALLRLATSNEGSKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQELRI*
EM172_1029212	EM172_10292122	F092227	MNEQKRKRALRIGCLVLAGVFVLSLLGSILMMLLL*
EM172_1032926	EM172_10329263	F101356	MPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
EM172_1081204	EM172_10812043	F029444	MGVSEQLTGFELEDLMSWTVSNLQHPFREDFSLEKSGIIAEKESQIFGRRFVGFDS*
EM172_1098505	EM172_10985053	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKKWATPEKTED
EM172_1111589	EM172_11115899	F068811	MDQDGSEHNICSNREGLCPGKEQHGAFGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETL*