3300000303: CECUM_9-2

Overview

Basic Information

• IMG/M Taxon OID: 3300000303
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0070986 | Gp0052895 | Ga0011199
• Sample Name: CECUM_9-2
• Sequencing Status: Permanent Draft
• Sequencing Center: University College Cork
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 80998730
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chicken Cecum Microbial Communities From Ireland
• Type: Host-Associated
• Taxonomy: Host-Associated → Birds → Digestive System → Ceca → Unclassified → Chicken Cecum → Chicken Cecum Microbial Communities From Ireland

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Ireland: Cork
• Coordinates
  • Lat. (^o): 51.897783
  • Long. (^o): -8.470613
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011632	Metagenome	288	Y
F053097	Metagenome / Metatranscriptome	141	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Cc92DRAFT_1006006	All Organisms → Viruses	11287
Cc92DRAFT_1025399	All Organisms → cellular organisms → Eukaryota → Opisthokonta	718

Sequences

Scaffold ID	Protein ID	Family	Sequence
Cc92DRAFT_1006006	Cc92DRAFT_10060067	F053097	MFDIKGDKIVFSTQDLAIPPFKEFYNNAKDKNLAKKQLEYVIWRYKWNTPYEAYPESERSERVALDVFGTNYEPDASVKELIKRFNEF*
Cc92DRAFT_1025399	Cc92DRAFT_10253993	F011632	VLI*KGGQAREWAAQRGGAVTDPGGGQRAFGCCAEGHGLARTIGEGRMVGLDDPVGLFQP