3300000296: Human fecal microbial communities from Cork, Ireland - EM337

Overview

Basic Information

• IMG/M Taxon OID: 3300000296
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0053773 | Ga0011204
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM337
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 97421688
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F047125	Metagenome / Metatranscriptome	150	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM337_1034674	All Organisms → cellular organisms → Bacteria	970
EM337_1044058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1239
EM337_1068430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	9026
EM337_1073593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1681

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM337_1034674	EM337_10346742	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLKKSGIIAEKESQIFGRRFAGFDGPKKAAPFFNF*
EM337_1044058	EM337_10440582	F047125	MDVALLLMVLGVMLSGFWAADALDHMRKEILRQEGKRRGWWS*
EM337_1068430	EM337_10684301	F026489	LTPKENQKSASDFDALDPRKRGCSPLLTPKGWAEPEKTEDSRLFGVKIF*
EM337_1073593	EM337_10735935	F090514	MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRTRAG