3300000292: Human fecal microbial communities from Cork, Ireland - EM305

Overview

Basic Information

• IMG/M Taxon OID: 3300000292
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0053769 | Ga0010830
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM305
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 60141310
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Bacteroides phage B40-8	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F039198	Metagenome	164	Y
F047125	Metagenome / Metatranscriptome	150	N
F055775	Metagenome	138	N
F062845	Metagenome	130	N
F076064	Metagenome	118	N
F084124	Metagenome	112	Y
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM305_1000021	All Organisms → Viruses → Predicted Viral	2385
EM305_1000242	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Bacteroides phage B40-8	5997
EM305_1000447	All Organisms → cellular organisms → Bacteria	11359
EM305_1002236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	121100
EM305_1003047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	888
EM305_1004674	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	4831
EM305_1005384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4343
EM305_1009946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	72199
EM305_1013488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12201

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM305_1000021	EM305_10000215	F089054	MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTYIRLKLREILEVNLTDITIIDIISLP*
EM305_1000242	EM305_10002422	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTIADVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVAAIALN*
EM305_1000447	EM305_10004472	F039198	MKLTIAEIQSTKYVQIYLTEEELQKKDTKDLIKKYKQEKYSMAIFVTGKENYPEILGKIITKQVELNRNVC*
EM305_1002236	EM305_100223654	F039198	MQITSCEITNTKYIQIYLTEEELEKQETKELIKKYKKEKCSVATFVTGKENYPEILEKIITKQVELNNNVC*
EM305_1003047	EM305_10030473	F026592	QTVCQNRLRAASPQGIAALAAQGGVATLTERSDETFSVMQYPPADRE*
EM305_1004674	EM305_10046745	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTHLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY*
EM305_1005384	EM305_10053844	F062845	MKKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSCA*
EM305_1009946	EM305_100994645	F084124	LLFGGLNKQAKAFARATKENTLHFHSQRIALTMFLAFLFIMAVACFNKLSLNTQTATLFATEEVISKXXXXMGAAQTRKPLKRLDLNF*
EM305_1013488	EM305_101348813	F047125	MDVILLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRGWWS*