3300000287: Human fecal microbial communities from Cork, Ireland - EM272

Overview

Basic Information

• IMG/M Taxon OID: 3300000287
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0053764 | Ga0010847
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM272
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 105120167
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F047126	Metagenome	150	N
F055775	Metagenome	138	N
F056682	Metagenome	137	Y
F068855	Metagenome	124	N
F081354	Metagenome	114	Y
F087336	Metagenome	110	N
F088914	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM272_1000399	Not Available	44861
EM272_1044642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	7192
EM272_1044887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	11644
EM272_1049572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	24132
EM272_1052091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8015
EM272_1061797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3954
EM272_1063199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	20191
EM272_1065436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4132
EM272_1072159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	19407
EM272_1073948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15743

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM272_1000399	EM272_100039957	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVAAIALN*
EM272_1044642	EM272_10446425	F081354	VKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPFCSPL*
EM272_1044887	EM272_10448878	F056682	MKMQSRAGKVANQSIRQGEIYSASFGAFLSKNRSTFPIQELRKNRENQEVL*
EM272_1049572	EM272_104957222	F087336	MVAELEQVPKAFRAAGNQRRATAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAPQEVNSQSALSESNQLISP*
EM272_1052091	EM272_10520914	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGSQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC*
EM272_1061797	EM272_10617975	F047125	MDVVLLLMVLGVMLSGFWAADAMDHMRKEIIRQEGKR
EM272_1063199	EM272_10631999	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQERALTPPYLGKVYFRSRLRGKG*
EM272_1065436	EM272_10654361	F044554	QGKCCAAGGGSVSWRSASSCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
EM272_1072159	EM272_107215924	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSTLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK*
EM272_1073948	EM272_10739483	F068855	VEVQGPQVRKSLAPQGLQAEKERENANVRNVGWLHSFDADYHYRGSDLHYHVNVSTALSE