NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000281

3300000281: Human fecal microbial communities from Cork, Ireland - EM227



Overview

Basic Information
IMG/M Taxon OID3300000281 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0045762 | Gp0054278 | Ga0010785
Sample NameHuman fecal microbial communities from Cork, Ireland - EM227
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI), Macrogen
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size57917107
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationCork, Ireland
CoordinatesLat. (o)51.907Long. (o)-8.472Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F032286Metagenome / Metatranscriptome180Y
F039198Metagenome164Y
F066905Metagenome126Y
F076064Metagenome118N
F089054Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
EM227_1000125All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes28939Open in IMG/M
EM227_1000160All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia135975Open in IMG/M
EM227_1000372All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia90265Open in IMG/M
EM227_1000673All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales14379Open in IMG/M
EM227_1000710Not Available13815Open in IMG/M
EM227_1001697All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales43748Open in IMG/M
EM227_1002707All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia13891Open in IMG/M
EM227_1016696All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii1865Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
EM227_1000125EM227_100012534F013656MEKKIYKEVNKNETETTINVLYKEEKICIYTNKVDLQKQLNKLLGEPTKEYKIKRSIVGSSWEIDFKEKSKISQMILKANIYEL*
EM227_1000160EM227_100016026F066905MQDEVRDCSCCNNCNQGGLFGNLFGGCNNDSTILFFIIIFLLLFTNFGCGCGR*
EM227_1000372EM227_100037233F039198MQITSCEIANSKYIQIYLTEEELEKQETKELIKRYKKEKCSVATFVTGKENYPEVLKKIVTKQVELDKNVC*
EM227_1000673EM227_10006736F066905MPEESRDCGCGRNNNCLSNLFGGCGCGDSSILFFIIIFLLLFCNCGCNR*
EM227_1000710EM227_100071030F089054MLTSGRFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWDKHSTYIRLKLREILKVNLRDITIIDIISLP*
EM227_1001697EM227_100169727F032286VTPVRHRALIFDTRLSAGNAANDVLITGSTFHFCRLTCLCVKRRNVILNGKRRSLLDSTLFHTDNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRTYPVRTVMQFSRFRCDYKTILAKNIALSRISKR*
EM227_1002707EM227_10027079F039198MKLTIAEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC*
EM227_1016696EM227_10166962F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY*

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