Basic Information | |
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IMG/M Taxon OID | 3300000281 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045762 | Gp0054278 | Ga0010785 |
Sample Name | Human fecal microbial communities from Cork, Ireland - EM227 |
Sequencing Status | Permanent Draft |
Sequencing Center | Beijing Genomics Institute (BGI), Macrogen |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 57917107 |
Sequencing Scaffolds | 8 |
Novel Protein Genes | 8 |
Associated Families | 6 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 3 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2 |
Not Available | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
Location Information | ||||||||
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Location | Cork, Ireland | |||||||
Coordinates | Lat. (o) | 51.907 | Long. (o) | -8.472 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013656 | Metagenome | 269 | Y |
F032286 | Metagenome / Metatranscriptome | 180 | Y |
F039198 | Metagenome | 164 | Y |
F066905 | Metagenome | 126 | Y |
F076064 | Metagenome | 118 | N |
F089054 | Metagenome | 109 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
EM227_1000125 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes | 28939 | Open in IMG/M |
EM227_1000160 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 135975 | Open in IMG/M |
EM227_1000372 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 90265 | Open in IMG/M |
EM227_1000673 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 14379 | Open in IMG/M |
EM227_1000710 | Not Available | 13815 | Open in IMG/M |
EM227_1001697 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 43748 | Open in IMG/M |
EM227_1002707 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia | 13891 | Open in IMG/M |
EM227_1016696 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii | 1865 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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EM227_1000125 | EM227_100012534 | F013656 | MEKKIYKEVNKNETETTINVLYKEEKICIYTNKVDLQKQLNKLLGEPTKEYKIKRSIVGSSWEIDFKEKSKISQMILKANIYEL* |
EM227_1000160 | EM227_100016026 | F066905 | MQDEVRDCSCCNNCNQGGLFGNLFGGCNNDSTILFFIIIFLLLFTNFGCGCGR* |
EM227_1000372 | EM227_100037233 | F039198 | MQITSCEIANSKYIQIYLTEEELEKQETKELIKRYKKEKCSVATFVTGKENYPEVLKKIVTKQVELDKNVC* |
EM227_1000673 | EM227_10006736 | F066905 | MPEESRDCGCGRNNNCLSNLFGGCGCGDSSILFFIIIFLLLFCNCGCNR* |
EM227_1000710 | EM227_100071030 | F089054 | MLTSGRFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWDKHSTYIRLKLREILKVNLRDITIIDIISLP* |
EM227_1001697 | EM227_100169727 | F032286 | VTPVRHRALIFDTRLSAGNAANDVLITGSTFHFCRLTCLCVKRRNVILNGKRRSLLDSTLFHTDNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRTYPVRTVMQFSRFRCDYKTILAKNIALSRISKR* |
EM227_1002707 | EM227_10027079 | F039198 | MKLTIAEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC* |
EM227_1016696 | EM227_10166962 | F076064 | LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY* |
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