3300000281: Human fecal microbial communities from Cork, Ireland - EM227

Overview

Basic Information

• IMG/M Taxon OID: 3300000281
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0054278 | Ga0010785
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM227
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57917107
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F066905	Metagenome	126	Y
F076064	Metagenome	118	N
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM227_1000125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	28939
EM227_1000160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	135975
EM227_1000372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	90265
EM227_1000673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14379
EM227_1000710	Not Available	13815
EM227_1001697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	43748
EM227_1002707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	13891
EM227_1016696	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1865

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM227_1000125	EM227_100012534	F013656	MEKKIYKEVNKNETETTINVLYKEEKICIYTNKVDLQKQLNKLLGEPTKEYKIKRSIVGSSWEIDFKEKSKISQMILKANIYEL*
EM227_1000160	EM227_100016026	F066905	MQDEVRDCSCCNNCNQGGLFGNLFGGCNNDSTILFFIIIFLLLFTNFGCGCGR*
EM227_1000372	EM227_100037233	F039198	MQITSCEIANSKYIQIYLTEEELEKQETKELIKRYKKEKCSVATFVTGKENYPEVLKKIVTKQVELDKNVC*
EM227_1000673	EM227_10006736	F066905	MPEESRDCGCGRNNNCLSNLFGGCGCGDSSILFFIIIFLLLFCNCGCNR*
EM227_1000710	EM227_100071030	F089054	MLTSGRFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWDKHSTYIRLKLREILKVNLRDITIIDIISLP*
EM227_1001697	EM227_100169727	F032286	VTPVRHRALIFDTRLSAGNAANDVLITGSTFHFCRLTCLCVKRRNVILNGKRRSLLDSTLFHTDNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRTYPVRTVMQFSRFRCDYKTILAKNIALSRISKR*
EM227_1002707	EM227_10027079	F039198	MKLTIAEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC*
EM227_1016696	EM227_10166962	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY*