3300000275: Human fecal microbial communities from Cork, Ireland - EM148

Overview

Basic Information

• IMG/M Taxon OID: 3300000275
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0054114 | Ga0010824
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM148
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 58254759
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F047125	Metagenome / Metatranscriptome	150	N
F090514	Metagenome	108	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM148_1003507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	17768
EM148_1003640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6343
EM148_1004834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4660
EM148_1009233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	13409

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM148_1003507	EM148_100350718	F026489	VAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF*
EM148_1003640	EM148_10036407	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGANWFVILLTIVPTGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG*
EM148_1004834	EM148_10048344	F047125	MDVVLLLMVLGVMLSGFRAADALDHMRKEILRQEGKRRGWWS*
EM148_1009233	EM148_10092339	F092227	MNEQKRKRALRIGCLVLAGVFVLSLLGSIFMMLPL*