3300000263: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_1000

Overview

Basic Information

• IMG/M Taxon OID: 3300000263
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0052330 | Ga0026413
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_1000
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57375237
• Sequencing Scaffolds: 11
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine aphotic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Line P, Station P4
• Coordinates
  • Lat. (^o): 48.65
  • Long. (^o): -126.666667
  • Alt. (m): N/A
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020717	Metagenome / Metatranscriptome	222	Y
F023453	Metagenome / Metatranscriptome	210	Y
F027203	Metagenome	195	Y
F030885	Metagenome / Metatranscriptome	184	Y
F038276	Metagenome	166	N
F039346	Metagenome / Metatranscriptome	164	Y
F059362	Metagenome / Metatranscriptome	134	Y
F065138	Metagenome / Metatranscriptome	128	N
F069480	Metagenome	124	N
F074041	Metagenome	120	Y
F083802	Metagenome / Metatranscriptome	112	N
F090619	Metagenome / Metatranscriptome	108	Y
F105864	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
LP_A_09_P04_1000DRAFT_1001060	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3135
LP_A_09_P04_1000DRAFT_1002165	All Organisms → Viruses → Predicted Viral	2240
LP_A_09_P04_1000DRAFT_1002381	All Organisms → Viruses → Predicted Viral	2135
LP_A_09_P04_1000DRAFT_1002432	All Organisms → Viruses → Predicted Viral	2112
LP_A_09_P04_1000DRAFT_1003206	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1835
LP_A_09_P04_1000DRAFT_1003995	All Organisms → cellular organisms → Bacteria	1624
LP_A_09_P04_1000DRAFT_1006853	All Organisms → cellular organisms → Bacteria → Proteobacteria	1189
LP_A_09_P04_1000DRAFT_1010264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	922
LP_A_09_P04_1000DRAFT_1011556	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	858
LP_A_09_P04_1000DRAFT_1017706	Not Available	660
LP_A_09_P04_1000DRAFT_1018423	Not Available	644

Sequences

Scaffold ID	Protein ID	Family	Sequence
LP_A_09_P04_1000DRAFT_1001060	LP_A_09_P04_1000DRAFT_10010602	F038276	MNLDFLLRLTNYVNICKQIYLAVIKQFLTVLVIINHACVLLHGNHNYKDVFYDRLSNQYIRNACDFHNLHISCNNLGLVLEKFLLDVKIINNKV*
LP_A_09_P04_1000DRAFT_1002165	LP_A_09_P04_1000DRAFT_10021655	F039346	MLTSFVITLIECLEIAFITLLISQTKVNKSTITIYASLGLLGGLLSAYFLHDILENYEWLMYAILSSLFLYLFVKNKEVRQHIQQHVDDISQSSSTVLFLTAFFIYGRESFEIFSNLFLNPNASWLAAGLAAFVAVMIYMFARDSKVKVYIFK
LP_A_09_P04_1000DRAFT_1002381	LP_A_09_P04_1000DRAFT_10023811	F059362	MTTKSFYMAGVIKTGEPFLVEDNVKLRKTADIEGNIGKIVRVGTMNDHESVYDIGSLISIDDVSLIIRSFRSGDLVAYDLNGTNSSV
LP_A_09_P04_1000DRAFT_1002381	LP_A_09_P04_1000DRAFT_10023815	F090619	ELSLVLLVMDNIFMISEKYIQIRTKVPINSDGTVFKEFNANEKFRRQDISIVLKLLPLIAKYKLDFLPKIVDYNENGYTYEFVDGKTLKEEIDNGILKLTQKMILEMKIAMDDIWKRFYDISIENKDDELFRGNGFLYHGDPWLGNVIWNDETKELKFIDIDSLSIAEFVPMTQLNNMFFQHLETLLTTQDNNKSTLGTWL*
LP_A_09_P04_1000DRAFT_1002432	LP_A_09_P04_1000DRAFT_10024322	F030885	MNSITEPSISIIGSTTTDGVALPYTVQMILNDEDNHKKFRKLMSEKFNHKDISIRISKYINEASIHFRNESDVAEFLLLAGE*
LP_A_09_P04_1000DRAFT_1003206	LP_A_09_P04_1000DRAFT_10032061	F038276	LLRLTNYVNIDKEIYLAVIKQFLTVLVIINHAYVLLHDNHNYKDVFYDRLGNRYIRNACDFHNLHISYNNLGLVLEKFLLYIKIINNKV*
LP_A_09_P04_1000DRAFT_1003995	LP_A_09_P04_1000DRAFT_10039953	F083802	IKFMKETITITKTDVLKGKISHSKWLKHKESRFNTLFPKRLEKVYSTIRSLSKLSNRNNYFYDSSNIFMALSSIVFELRELAASYGLDSSDIKIDIYSLSDQQKKPTLKTDDIRNNDAKDIASELLEIIEKKIKTEEKLHSEINTLKRELSFLRDKVENQQWSSTRNFT*
LP_A_09_P04_1000DRAFT_1006853	LP_A_09_P04_1000DRAFT_10068532	F020717	MTRKQSEILMTLVIVVCTRFLALLETTQCLDFLRPHHILHENKDIRCFRDLNEQKDISISALKLMLSEN*
LP_A_09_P04_1000DRAFT_1010264	LP_A_09_P04_1000DRAFT_10102641	F023453	WAKKQAPLFEASASAESLSKTILQKAVHKFKGQPEPDEAKTKEMQDYMAGLEAKLGNEKVEKTILQKFFGFFRSHPRWIGLGVIILMLISPMLPSIAVIGLSLEKILSMTLAGLYAIDIASPAVKTALEL*
LP_A_09_P04_1000DRAFT_1010956	LP_A_09_P04_1000DRAFT_10109562	F027203	PEARIVGLSRVNVPIEVERLAFTLNSLIPFSYNS*
LP_A_09_P04_1000DRAFT_1011556	LP_A_09_P04_1000DRAFT_10115562	F069480	MRLVPNHIELIDRIYILQLCNTSKRVEGNAGQILDEAPKNKPYNTVKTVFFSVFKPVVFL
LP_A_09_P04_1000DRAFT_1013749	LP_A_09_P04_1000DRAFT_10137491	F105864	MINNTKIIPDPGIVVSKLNIASGRYFCGTRLLISSKKNLITMTLKTRGIQKRRPEIK*
LP_A_09_P04_1000DRAFT_1017706	LP_A_09_P04_1000DRAFT_10177062	F065138	MRYADLFEISVVDSKVIDLLSILSSEGVNQIPLDALVKELTSMGVDVDDESLFDEITNLPIVNNIKDGTVYFNTASLQASNLNKVDPEKNKKKVKAMAKKQVDKELSK*
LP_A_09_P04_1000DRAFT_1018423	LP_A_09_P04_1000DRAFT_10184232	F074041	MATTKAKHIVAAKQSDPIMKLVKQIGAEDIATDVINAIMSPLXNLLTTQGEDTESAFNKAITLIAASDPKNQLELMLATQLAMTHITLGKSAQLLDRNYSQVKSTNSLGNLYTKLSRLGIDQINTLERMKGKGQ