3300000253: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 1000m

Overview

Basic Information

• IMG/M Taxon OID: 3300000253
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0054008 | Ga0026089
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 1000m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17706213
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine aphotic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: P12, Pacific Ocean
• Coordinates
  • Lat. (^o): 48.97
  • Long. (^o): -130.666667
  • Alt. (m): N/A
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017906	Metagenome	238	Y
F020717	Metagenome / Metatranscriptome	222	Y
F025055	Metagenome	203	Y
F027203	Metagenome	195	Y
F031535	Metagenome	182	N

Associated Scaffolds

Scaffold	Taxonomy	Length
LPjun08P121000mDRAFT_101659	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1207
LPjun08P121000mDRAFT_102252	Not Available	1025
LPjun08P121000mDRAFT_105419	Not Available	635
LPjun08P121000mDRAFT_107869	Not Available	520

Sequences

Scaffold ID	Protein ID	Family	Sequence
LPjun08P121000mDRAFT_101659	LPjun08P121000mDRAFT_1016591	F031535	KTTTDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFGFYTIDIE*
LPjun08P121000mDRAFT_102252	LPjun08P121000mDRAFT_1022522	F020717	MTRKQSEILMTLVIVACTRFLALLETTQCWDFLRPHHILHENKDIRCFRDLNEQKDISISXLKLMLSEN*
LPjun08P121000mDRAFT_105419	LPjun08P121000mDRAFT_1054192	F025055	MSYFRNSAGDKKIAKATYSDSQMIEVLGGTVKKIFNYEEEDNITFLKNEVFWLNYLKSKWVPELLEVGKNYVITSYYGPDLTKVHHLSRPKDLANQTLEMYRFFKDKNVFKLNGALRNMTLNKGQLVAFDFKHARFRTNKYIDYEIYSYEKWISKIDIEL
LPjun08P121000mDRAFT_107621	LPjun08P121000mDRAFT_1076211	F027203	KIPEARIVGLSRVNVPIEVERLAVTLISLIIFSYNSST*
LPjun08P121000mDRAFT_107869	LPjun08P121000mDRAFT_1078691	F017906	HINSNVMDTCEIEGGEKGQFDIFRNGELFLSKEDMGRFPTKEDVDDMIREIKSFPE*