3300000208: Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_AFX

Overview

Basic Information

• IMG/M Taxon OID: 3300000208
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053053 | Gp0053411 | Ga0026123
• Sample Name: Feedstock adapted compost microbial communities from Newby Island compost facility, Milpitas, CA, USA - Passage 4_AFX
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 177830987
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Feedstock Adapted Compost Microbial Communities From Newby Island Compost Facility, Milpitas Ca
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost → Feedstock Adapted Compost Microbial Communities From Newby Island Compost Facility, Milpitas Ca

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Newby Island compost facility, Milpitas, CA
• Coordinates
  • Lat. (^o): 37.454581
  • Long. (^o): -121.928712
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004253	Metagenome	446	Y
F028447	Metagenome / Metatranscriptome	191	Y
F036417	Metagenome / Metatranscriptome	170	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
NICFPass4AFXDRAFT_c001079	All Organisms → cellular organisms → Bacteria	18793
NICFPass4AFXDRAFT_c009255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3606
NICFPass4AFXDRAFT_c024934	All Organisms → cellular organisms → Bacteria	1200

Sequences

Scaffold ID	Protein ID	Family	Sequence
NICFPass4AFXDRAFT_c001079	NICFPass4AFXDRAFT_00107918	F036417	LPRRRGFAICFRAMVYPARVPLRTRIPTVLVRLATDDGEVVFRARWTRSPLELQRNILFRMRRGSLLWFQDEWGHDLCFRPECVYAAMVDGR
NICFPass4AFXDRAFT_c009255	NICFPass4AFXDRAFT_0092555	F004253	MRSALRQPPNKQLQRTVIPNHGRAASAPPHYALAARGIRGRAAAELRR
NICFPass4AFXDRAFT_c024934	NICFPass4AFXDRAFT_0249341	F028447	DGSGWAEVDWVSAVRGSRYYYRHAEPHDEALAMLPPFYRVVTRLDTPDLHAPHENSYYVPRERLADFLLEIALAGGAETIWHVEPCPDPPPESRVRQITGTP