3300000204: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 150m

Overview

Basic Information

• IMG/M Taxon OID: 3300000204
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053620 | Ga0025998
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 150m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43319669
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium EB0_41B09	1
Not Available	6
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet 36, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.5663346
  • Long. (^o): -123.5193257
  • Alt. (m): N/A
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002125	Metagenome / Metatranscriptome	591	Y
F011294	Metagenome / Metatranscriptome	292	Y
F024324	Metagenome / Metatranscriptome	206	N
F028007	Metagenome / Metatranscriptome	193	N
F035724	Metagenome	171	Y
F046847	Metagenome / Metatranscriptome	150	N
F059474	Metagenome / Metatranscriptome	134	Y
F063398	Metagenome / Metatranscriptome	129	N
F070021	Metagenome / Metatranscriptome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SI36aug09_150mDRAFT_c1004787	All Organisms → cellular organisms → Bacteria → Proteobacteria	1096
SI36aug09_150mDRAFT_c1005793	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium EB0_41B09	977
SI36aug09_150mDRAFT_c1005857	Not Available	971
SI36aug09_150mDRAFT_c1006119	Not Available	947
SI36aug09_150mDRAFT_c1008708	All Organisms → cellular organisms → Bacteria	777
SI36aug09_150mDRAFT_c1009643	Not Available	738
SI36aug09_150mDRAFT_c1009823	Not Available	730
SI36aug09_150mDRAFT_c1016821	Not Available	550
SI36aug09_150mDRAFT_c1018588	Not Available	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI36aug09_150mDRAFT_c1004787	SI36aug09_150mDRAFT_10047872	F063398	LKINKTTKNEVKLVVKKEIFEIVFFGHWTKDSSNPGIEPLLNNLVDYPKIKKLTFSTKDLGDWDSFLMTQLVLIINFAKKKKITIVTQS
SI36aug09_150mDRAFT_c1005793	SI36aug09_150mDRAFT_10057933	F011294	PSQMMDKAIANLPAYSNVKKCSSDSVTDAIVIIKPILSYQPQSTILYGDLKVKIYQSKSNRETHPDNFIREMNISHWKVLRFDKVTMDHYVNEVYTKLLEQLILKIDALQINKNYPTNGSLCDLLSTLRKSKINLRH*
SI36aug09_150mDRAFT_c1005857	SI36aug09_150mDRAFT_10058573	F070021	MTIIKWISVLSLWALIGLVVHNQFXPNTVFGSVMGSAFIFIWFGVLIIGIFIRQKLKNK*
SI36aug09_150mDRAFT_c1006119	SI36aug09_150mDRAFT_10061193	F046847	MPDVDKTVEVETPKTENEVVLSQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFI
SI36aug09_150mDRAFT_c1008708	SI36aug09_150mDRAFT_10087081	F028007	MEEWLIEQWKNGLMGKQAGSSNKKILLIVVVAVVVVIAYLYLSK*
SI36aug09_150mDRAFT_c1009643	SI36aug09_150mDRAFT_10096432	F024324	GNCDLDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
SI36aug09_150mDRAFT_c1009823	SI36aug09_150mDRAFT_10098232	F035724	MRFDYPTVVSATTSLVFNNNPESPYEREVIKHNSSVQMEDGSMFIYSRSVTNYRYSISVVLTSESERDALESFYDSTVNGAEKTFEYTDPYGDVYTVRFDESMRISEIFKDRLYRATFTLLQTA*
SI36aug09_150mDRAFT_c1016821	SI36aug09_150mDRAFT_10168211	F002125	LNFQTYLLRTAVIALVGEPSLTSVDLFVSKDTAKLMFLRKRQQPIIEVQKVNK*
SI36aug09_150mDRAFT_c1018588	SI36aug09_150mDRAFT_10185882	F059474	MAFKAIDRSETLEVVSTDDPAIDLKKSDVDAYKDSHDMKHLSFIDGEQPTVFHLGTITFMKFAEIKDKHISFDLSDNGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGI