3300000198: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_200

Overview

Basic Information

• IMG/M Taxon OID: 3300000198
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0052387 | Ga0025990
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_200
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 156793823
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine aphotic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Line P, North Pacific Ocean
• Coordinates
  • Lat. (^o): 48.35
  • Long. (^o): -123.3
  • Alt. (m): N/A
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008692	Metagenome / Metatranscriptome	329	Y
F023637	Metagenome / Metatranscriptome	209	Y
F029271	Metagenome / Metatranscriptome	189	N
F043625	Metagenome	156	Y
F046847	Metagenome / Metatranscriptome	150	N
F048788	Metagenome	147	Y
F061392	Metagenome / Metatranscriptome	132	N
F062150	Metagenome / Metatranscriptome	131	N
F089034	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
LP_F_10_S103_200DRAFT_c1008398	Not Available	2469
LP_F_10_S103_200DRAFT_c1008922	Not Available	2372
LP_F_10_S103_200DRAFT_c1019674	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1240
LP_F_10_S103_200DRAFT_c1021899	All Organisms → Viruses → Predicted Viral	1128
LP_F_10_S103_200DRAFT_c1023009	Not Available	1080
LP_F_10_S103_200DRAFT_c1025050	Not Available	1000
LP_F_10_S103_200DRAFT_c1032023	Not Available	807
LP_F_10_S103_200DRAFT_c1044262	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	623
LP_F_10_S103_200DRAFT_c1048459	Not Available	583

Sequences

Scaffold ID	Protein ID	Family	Sequence
LP_F_10_S103_200DRAFT_c1008398	LP_F_10_S103_200DRAFT_10083981	F048788	MKNNYWIVDEWLIFKPNFNEELTNYYDIINKYKKVIFSNYDDPLIAIETNNNYKYKYKNNYIKSNFNKKTDLL
LP_F_10_S103_200DRAFT_c1008922	LP_F_10_S103_200DRAFT_10089223	F023637	TTLPYRSRKGRYFSQHHKRNDIVGNKFVHQKDTSINERRFIDEVKGGMINTDEDGLADLNYNIVKREYLFNTEHEIIDFRCEQDIPNHVEI*
LP_F_10_S103_200DRAFT_c1019674	LP_F_10_S103_200DRAFT_10196741	F061392	VVFKKLSIISAVFVVVIVLQLXTFASELDTPDPXFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ*
LP_F_10_S103_200DRAFT_c1021899	LP_F_10_S103_200DRAFT_10218993	F046847	MADEHTNGTDETPKSENEVVLSQSKLDKLIDKGFSKGANRAKSELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELINTLNGTIKGLEANNNEIKADMAVQKVVSENGIKDADYFKHLLAQASAV
LP_F_10_S103_200DRAFT_c1023009	LP_F_10_S103_200DRAFT_10230093	F029271	MSKLSDLQEIKKLLDVDFRRHQFLDNQYNNSPSFNYGAAKSYVADIHQFLSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK*
LP_F_10_S103_200DRAFT_c1025050	LP_F_10_S103_200DRAFT_10250501	F062150	VSFSKPILFSYVKSDDSKWFATFFFGPTWNDEKIYVEELFYKPYSVANGGKFNIGFGQQLIPYGSNLPYLDLTRRDMFTYQTSWDVGELVLGRGVSVYGALGEKGYLETYFGDDINHGWSDYASARVSYEVANQFVALSVDNQERQSIDVSGLNDKIEYIAEYSLSDEYYFARAVIKPGLYGLNLLAGYESFPNKDAKPLYGVMWTFDGEYPGSFLSAEFSGEGDITFKINADLGILKLGDSKNE*
LP_F_10_S103_200DRAFT_c1025050	LP_F_10_S103_200DRAFT_10250502	F089034	MNNFTKGIMILFGSILAWSSLEVTGSYIFAEGAGPVTLLSTRFLIATILFGVTILFQKYRTGENLFLVEKQDIKRFLTNGAFLAVHLIT
LP_F_10_S103_200DRAFT_c1032023	LP_F_10_S103_200DRAFT_10320231	F048788	MENNYWIVDEWLIFKPEFNKVLTIYYDIINQYKKIMFSNYNDSLIAIETNNKYSNNLIQSKFNQEIDLSNNVNLTHLTFGE
LP_F_10_S103_200DRAFT_c1044262	LP_F_10_S103_200DRAFT_10442623	F008692	MKTKREIEKETSYMPSSEEEFQADLDAEDMRYHQYCREQQEMYDDDYMNWSDDEYMNWSGKR*
LP_F_10_S103_200DRAFT_c1048459	LP_F_10_S103_200DRAFT_10484591	F043625	NGEKVLHIDNGKFVSKKVIDKPEVRFKIVQPKNN*